Factsheet for Zm00001d025783_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole, mitochondrion, plastid, plasma membrane

Predictor Summary:

plastid 1
extracellular 3
endoplasmic reticulum 2
vacuole 3
plasma membrane 3
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion, plasma membrane, plastid, vacuole
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d011723_P002
Zm00001d011729_P002
Zm00001d016987_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14570.1	Zm00001d011723_P002	AT4G32650.1	15299147
AT5G14570.1	Zm00001d011729_P002	AT4G32650.1	15299147
AT5G14570.1	Zm00001d016987_P001	AT4G32650.1	15299147

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044504_P001	Maize	plasma membrane	91.19	36.29
OQU87011	Sorghum	plasma membrane	87.56	34.92
TraesCS7A01G428500.1	Wheat	golgi, peroxisome, plasma membrane	77.2	31.84
Os01t0547600-01	Rice	plasma membrane	77.2	30.72
TraesCS7B01G328700.1	Wheat	golgi, peroxisome, plasma membrane	76.17	30.25
HORVU7Hr1G098550.3	Barley	plasma membrane	75.65	30.23
TraesCS7D01G420900.1	Wheat	golgi, peroxisome, plasma membrane	75.13	30.02
Zm00001d016468_P001	Maize	plasma membrane	33.16	29.91
GSMUA_Achr1P25450_001	Banana	plasma membrane	50.26	20.86
PGSC0003DMT400017804	Potato	plasma membrane	41.45	18.87
Solyc02g067790.2.1	Tomato	golgi, peroxisome, plasma membrane	41.97	17.61
VIT_14s0066g00850.t01	Wine grape	plasma membrane	41.45	17.58
Bra023475.1-P	Field mustard	plastid	41.45	16.53
CDX85593	Canola	golgi, peroxisome, plasma membrane, plastid	41.45	16.53
AT5G14570.1	Thale cress	plastid	41.97	16.43
CDX91044	Canola	golgi, peroxisome, plasma membrane, plastid	41.45	15.94
Zm00001d011679_P001	Maize	plasma membrane	42.49	15.77
Zm00001d014976_P001	Maize	plasma membrane	39.9	14.75
Zm00001d054060_P001	Maize	plastid	36.27	13.36
Zm00001d054057_P001	Maize	extracellular	35.75	13.17

Protein Annotations

EnsemblPlants:Zm00001d025783_P001	EnsemblPlants:Zm00001d025783_T001	EnsemblPlantsGene:Zm00001d025783	Gene3D:1.20.1250.20	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:MFS_trans_sf	PANTHER:PTHR23515	PANTHER:PTHR23515:SF5	ProteinID:AQK44570.1	SEG:seg
SUPFAM:SSF103473	TMHMM:TMhelix	UniParc:UPI000844E4C0	UniProt:A0A1D6J9I0	MapMan:35.1	:

Description

High affinity nitrate transporter 2.7

Coordinates

chr10:-:129514824..129515670

Molecular Weight (calculated)

19611.3 Da

IEP (calculated)

9.039

GRAVY (calculated)

0.921

Length

193 amino acids

Sequence
(BLAST)

001: MGPACDLLGP RRASGFASLL AALAVAATTS SPAGFVALCF VAGLSLANFV ANQHWMSGIF VPSAVGLANA VTASWANVGS TAAQLVMPLV YELVLRLDVP
101: ITVAWRVTYL LPCVLLITTG LAVITFPYDL PCGAGVGGGA KTGKSLWKVV RGGVDNYRAM GAAKAPSLAA TMAVMVLCAA FVLASSGFTF GIQ

Best Arabidopsis Sequence Match ( AT5G14570.1 )
(BLAST)

001: MEPSQRNTKP PSFSDSTIPV DSDGRATVFR PFSLSSPHSR AFHLAWLSLF SCFFSTFSIP PLVPVISSDL NLSASTVSAA GIASFAGSIF SRLAMGPLCD
101: LIGPRTSSAI LSFLTAPVIL SASLVSSPTS FILVRFFVGF SLANFVANQY WMSSMFSGNV IGLANGVSAG WANVGAGISQ LLMPLIYSTI AEFLPRAVAW
201: RVSFVFPAIF QVTTAVLVLL YGQDTPHGNR KNSNQNKLTI PEEEEVLVVE EDERSSFVEI LIGGLGNYRA WILALLYGYS YGVELTTDNV IAGYFYERFG
301: VNLEAAGTIA ASFGISNIAS RPAGGMISDA LGKRFGMRGR LWGLWIVQSV AGLLCVLLGR VNSLWGSILV MWVFSVFVQA ASGLVFGVVP FVSTRSLGVV
401: AGITGSGGTV GAVVTQFLLF SGDDVRKQRS ISLMGLMTFV FALSVTSIYF PQWGGMCCGP SSSSEEEDIS RGLLVEDEDE EGKVVSGSLR PVC

Arabidopsis Description

NRT2.7NRT2.7 [Source:UniProtKB/TrEMBL;Acc:A0A178UKX9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.