Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P05260_001 | |
| GSMUA_Achr5P09770_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G14570.1 | GSMUA_Achr1P05260_001 | AT4G32650.1 | 15299147 |
| AT5G14570.1 | GSMUA_Achr5P09770_001 | AT4G32650.1 | 15299147 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_14s0066g00850.t01 | Wine grape | plasma membrane | 61.29 | 62.64 |
| PGSC0003DMT400017804 | Potato | plasma membrane | 56.13 | 61.56 |
| Solyc02g067790.2.1 | Tomato | golgi, peroxisome, plasma membrane | 58.71 | 59.35 |
| OQU87011 | Sorghum | plasma membrane | 57.63 | 55.37 |
| HORVU7Hr1G098550.3 | Barley | plasma membrane | 56.99 | 54.87 |
| TraesCS7D01G420900.1 | Wheat | golgi, peroxisome, plasma membrane | 56.56 | 54.45 |
| TraesCS7B01G328700.1 | Wheat | golgi, peroxisome, plasma membrane | 56.77 | 54.32 |
| Zm00001d044504_P001 | Maize | plasma membrane | 56.56 | 54.23 |
| AT5G14570.1 | Thale cress | plastid | 56.56 | 53.35 |
| Os01t0547600-01 | Rice | plasma membrane | 55.48 | 53.2 |
| CDX85593 | Canola | golgi, peroxisome, plasma membrane, plastid | 55.27 | 53.1 |
| Bra023475.1-P | Field mustard | plastid | 55.05 | 52.89 |
| GSMUA_Achr4P06400_001 | Banana | plasma membrane | 52.26 | 52.83 |
| CDX91044 | Canola | golgi, peroxisome, plasma membrane, plastid | 55.48 | 51.39 |
| GSMUA_Achr4P13270_001 | Banana | plasma membrane | 50.11 | 50.76 |
| TraesCS7A01G428500.1 | Wheat | golgi, peroxisome, plasma membrane | 50.97 | 50.64 |
| Zm00001d025783_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid, vacuole | 20.86 | 50.26 |
| GSMUA_Achr8P14230_001 | Banana | golgi, peroxisome, plasma membrane | 48.17 | 44.62 |
| GSMUA_Achr11P... | Banana | cytosol | 46.02 | 44.4 |
| Zm00001d016468_P001 | Maize | plasma membrane | 20.43 | 44.39 |
Protein Annotations
| Gene3D:1.20.1250.20 | MapMan:24.2.2.10 | MapMan:25.1.3.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0009705 | GO:GO:0015112 | GO:GO:0015706 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 |
| EnsemblPlantsGene:GSMUA_Achr1G25450_001 | EnsemblPlants:GSMUA_Achr1P25450_001 | EnsemblPlants:GSMUA_Achr1T25450_001 | InterPro:IPR020846 | UniProt:M0S302 | InterPro:MFS |
| InterPro:MFS_dom | InterPro:MFS_trans_sf | PFAM:PF07690 | ScanProsite:PS00216 | PFscan:PS50850 | PANTHER:PTHR23515 |
| PANTHER:PTHR23515:SF5 | SUPFAM:SSF103473 | InterPro:Sugar_transporter_CS | TMHMM:TMhelix | UniParc:UPI0002956E83 | SEG:seg |
Description
Putative Nitrate transporter [Source:GMGC_GENE;Acc:GSMUA_Achr1G25450_001]
Coordinates
chr1:-:19799329..19800836
Molecular Weight (calculated)
49276.3 Da
IEP (calculated)
8.394
GRAVY (calculated)
0.544
Length
465 amino acids
Sequence
(BLAST)
(BLAST)
001: MQEKEEVSKF ALPVDEEHKA TELRLLSAAG PHMRAFHLAW LSLFTCYFST FATPPLLPVL RRHLHLSPVD VAHAGVASVS GIIVARLAMG PACDLLGPRV
101: ASAALALLTA PAVYAASAVS SPTGFIVLRF VAGLSLANFV ANQYWMSSMF APGVVGRANG VSAGWANAGS GAAQFLMPLA YSFILRLSGS PSFSWRAAFL
201: IPATLQVVGA LAVLAFGQDL PDGNFVSFSR SQEKRSLRKP TSKEGFWVVI ADGLGNYRGW ILCLTYGYCY GVELAMENVV AEYFYGRFGL GVEAAGLVAA
301: CFGMANVVSR PAGGMISDAM GRRFGMRGRL WSLWVVQTVG GVLCVLLGRM SSLGASMAVM CCFAFFAQAA SGLTYGVVPF VSKRSLGVIS GLTGSGGALG
401: GVVIQLLFFS GTKYSKETGI SLMGVMVLVC TLPVSLIYFP QWGGMFCGSS TAEDDDPEED YHLLK
101: ASAALALLTA PAVYAASAVS SPTGFIVLRF VAGLSLANFV ANQYWMSSMF APGVVGRANG VSAGWANAGS GAAQFLMPLA YSFILRLSGS PSFSWRAAFL
201: IPATLQVVGA LAVLAFGQDL PDGNFVSFSR SQEKRSLRKP TSKEGFWVVI ADGLGNYRGW ILCLTYGYCY GVELAMENVV AEYFYGRFGL GVEAAGLVAA
301: CFGMANVVSR PAGGMISDAM GRRFGMRGRL WSLWVVQTVG GVLCVLLGRM SSLGASMAVM CCFAFFAQAA SGLTYGVVPF VSKRSLGVIS GLTGSGGALG
401: GVVIQLLFFS GTKYSKETGI SLMGVMVLVC TLPVSLIYFP QWGGMFCGSS TAEDDDPEED YHLLK
001: MEVEGKGGEA GTTTTTAPRR FALPVDAENK ATTFRLFSVA KPHMRAFHLS WFQFFCCFVS TFAAPPLLPV IRENLNLTAT DIGNAGIASV SGAVFARIVM
101: GTACDLFGPR LASAALTLST APAVYFTAGI KSPIGFIMVR FFAGFSLATF VSTQFWMSSM FSGPVVGSAN GIAAGWGNLG GGATQLIMPI VFSLIRNMGA
201: TKFTAWRIAF FIPGLFQTLS AFAVLLFGQD LPDGDYWAMH KSGEREKDDV GKVISNGIKN YRGWITALAY GYCFGVELTI DNIIAEYFFD RFHLKLQTAG
301: IIAASFGLAN FFARPGGGIF SDFMSRRFGM RGRLWAWWIV QTSGGVLCAC LGQISSLTVS IIVMLVFSVF VQAACGLTFG VVPFISRRSL GVVSGMTGAG
401: GNVGAVLTQL IFFKGSTYTR ETGITLMGVM SIACSLPICL IYFPQWGGMF CGPSSKKVTE EDYYLAEWND EEKEKNLHIG SQKFAETSIS ERGRATTTHP
501: QT
101: GTACDLFGPR LASAALTLST APAVYFTAGI KSPIGFIMVR FFAGFSLATF VSTQFWMSSM FSGPVVGSAN GIAAGWGNLG GGATQLIMPI VFSLIRNMGA
201: TKFTAWRIAF FIPGLFQTLS AFAVLLFGQD LPDGDYWAMH KSGEREKDDV GKVISNGIKN YRGWITALAY GYCFGVELTI DNIIAEYFFD RFHLKLQTAG
301: IIAASFGLAN FFARPGGGIF SDFMSRRFGM RGRLWAWWIV QTSGGVLCAC LGQISSLTVS IIVMLVFSVF VQAACGLTFG VVPFISRRSL GVVSGMTGAG
401: GNVGAVLTQL IFFKGSTYTR ETGITLMGVM SIACSLPICL IYFPQWGGMF CGPSSKKVTE EDYYLAEWND EEKEKNLHIG SQKFAETSIS ERGRATTTHP
501: QT
Arabidopsis Description
NRT2.5High affinity nitrate transporter 2.5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.