Factsheet for Zm00001d016468_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d011723_P002
Zm00001d011729_P002
Zm00001d016987_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14570.1	Zm00001d011723_P002	AT4G32650.1	15299147
AT5G14570.1	Zm00001d011729_P002	AT4G32650.1	15299147
AT5G14570.1	Zm00001d016987_P001	AT4G32650.1	15299147

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044504_P001	Maize	plasma membrane	89.25	39.38
OQU87011	Sorghum	plasma membrane	84.58	37.4
Zm00001d025783_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid, vacuole	29.91	33.16
TraesCS7A01G428500.1	Wheat	golgi, peroxisome, plasma membrane	71.96	32.91
HORVU7Hr1G098550.3	Barley	plasma membrane	70.09	31.06
TraesCS7B01G328700.1	Wheat	golgi, peroxisome, plasma membrane	70.09	30.86
TraesCS7D01G420900.1	Wheat	golgi, peroxisome, plasma membrane	69.16	30.64
Os01t0547600-01	Rice	plasma membrane	69.16	30.52
GSMUA_Achr1P25450_001	Banana	plasma membrane	44.39	20.43
VIT_14s0066g00850.t01	Wine grape	plasma membrane	38.32	18.02
AT5G14570.1	Thale cress	plastid	39.25	17.04
Solyc02g067790.2.1	Tomato	golgi, peroxisome, plasma membrane	36.45	16.96
CDX85593	Canola	golgi, peroxisome, plasma membrane, plastid	35.98	15.91
Bra023475.1-P	Field mustard	plastid	35.51	15.7
CDX91044	Canola	golgi, peroxisome, plasma membrane, plastid	35.98	15.34
PGSC0003DMT400017804	Potato	plasma membrane	30.37	15.33
Zm00001d011679_P001	Maize	plasma membrane	36.92	15.19
Zm00001d014976_P001	Maize	plasma membrane	34.11	13.98
Zm00001d054057_P001	Maize	extracellular	34.11	13.93
Zm00001d054060_P001	Maize	plastid	34.11	13.93

Protein Annotations

EnsemblPlants:Zm00001d016468_P001	EnsemblPlants:Zm00001d016468_T001	EnsemblPlantsGene:Zm00001d016468	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR23515	PANTHER:PTHR23515:SF5	ProteinID:AQK70872.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI000220D69C
UniProt:A0A1D6H7Z9	MapMan:35.1	:	:	:	:

Description

High affinity nitrate transporter 2.7

Coordinates

chr5:-:163436947..163437858

Molecular Weight (calculated)

23324.6 Da

IEP (calculated)

8.975

GRAVY (calculated)

0.358

Length

214 amino acids

Sequence
(BLAST)

001: MGKKLQLADD EENCWYGVGG AEAECGVDDE FRATDLRPLS LLSPHTQAFH LAWLSLFVCF FAAFAAPPIL PALRPALVLM PSDAPAAAVG SLSATLLVMP
101: LAYELVLRLG VPITVAWRVT YLLPCTLLIT TGLAVLAFPN DHPRGVGAGA KTGNSLWKVV PGGVGNYRAW VLALTYGYCY GVELIMENVA ANFFRKRFHL
201: PWRLRAPRRR ASAR

Best Arabidopsis Sequence Match ( AT1G12940.1 )
(BLAST)

001: MEVEGKGGEA GTTTTTAPRR FALPVDAENK ATTFRLFSVA KPHMRAFHLS WFQFFCCFVS TFAAPPLLPV IRENLNLTAT DIGNAGIASV SGAVFARIVM
101: GTACDLFGPR LASAALTLST APAVYFTAGI KSPIGFIMVR FFAGFSLATF VSTQFWMSSM FSGPVVGSAN GIAAGWGNLG GGATQLIMPI VFSLIRNMGA
201: TKFTAWRIAF FIPGLFQTLS AFAVLLFGQD LPDGDYWAMH KSGEREKDDV GKVISNGIKN YRGWITALAY GYCFGVELTI DNIIAEYFFD RFHLKLQTAG
301: IIAASFGLAN FFARPGGGIF SDFMSRRFGM RGRLWAWWIV QTSGGVLCAC LGQISSLTVS IIVMLVFSVF VQAACGLTFG VVPFISRRSL GVVSGMTGAG
401: GNVGAVLTQL IFFKGSTYTR ETGITLMGVM SIACSLPICL IYFPQWGGMF CGPSSKKVTE EDYYLAEWND EEKEKNLHIG SQKFAETSIS ERGRATTTHP
501: QT

Arabidopsis Description

NRT2.5High affinity nitrate transporter 2.5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.