CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
EES07044
OQU87429

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14570.1	EES07044	AT4G32650.1	15299147
AT5G14570.1	OQU87429	AT4G32650.1	15299147

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044504_P001	Maize	plasma membrane	92.56	92.37
Zm00001d025783_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid, vacuole	34.92	87.56
Zm00001d016468_P001	Maize	plasma membrane	37.4	84.58
Os01t0547600-01	Rice	plasma membrane	80.79	80.62
TraesCS7B01G328700.1	Wheat	golgi, peroxisome, plasma membrane	80.58	80.25
TraesCS7D01G420900.1	Wheat	golgi, peroxisome, plasma membrane	79.96	80.12
HORVU7Hr1G098550.3	Barley	plasma membrane	79.34	79.5
TraesCS7A01G428500.1	Wheat	golgi, peroxisome, plasma membrane	71.9	74.36
GSMUA_Achr1P25450_001	Banana	plasma membrane	55.37	57.63
VIT_14s0066g00850.t01	Wine grape	plasma membrane	47.31	50.33
PGSC0003DMT400017804	Potato	plasma membrane	43.8	50.0
Solyc02g067790.2.1	Tomato	golgi, peroxisome, plasma membrane	46.28	48.7
AT5G14570.1	Thale cress	plastid	46.49	45.64
CDX85593	Canola	golgi, peroxisome, plasma membrane, plastid	45.25	45.25
Bra023475.1-P	Field mustard	plastid	45.04	45.04
CDX91044	Canola	golgi, peroxisome, plasma membrane, plastid	45.45	43.82
EES01339	Sorghum	plasma membrane	45.25	42.52
EES04350	Sorghum	plastid	40.7	36.82
EES04351	Sorghum	golgi, peroxisome, plasma membrane	38.43	35.29
EES06135	Sorghum	golgi, peroxisome, plasma membrane	38.43	35.29

Protein Annotations

Gene3D:1.20.1250.20	MapMan:24.2.2.10	MapMan:25.1.3.1	UniProt:A0A1W0VY21	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0006810
GO:GO:0008150	GO:GO:0009705	GO:GO:0015112	GO:GO:0015706	GO:GO:0016020	GO:GO:0016021
GO:GO:0055085	InterPro:MFS	InterPro:MFS_trans_sf	EnsemblPlants:OQU87011	ProteinID:OQU87011	ProteinID:OQU87011.1
PFAM:PF07690	PANTHER:PTHR23515	PANTHER:PTHR23515:SF5	EnsemblPlantsGene:SORBI_3003G188200	SUPFAM:SSF103473	TMHMM:TMhelix
UniParc:UPI0009DC91A4	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:50725473..50728056

Molecular Weight (calculated)

49217.0 Da

IEP (calculated)

7.672

GRAVY (calculated)

0.656

Length

484 amino acids

Sequence
(BLAST)

001: MGKLPNDEEN CYGVGGAEAS GGVDAEGRAT DLRPLALSSP HTQAFHLAWL SLFACFFAAF AAPPILPALR PALVLAPSDA AAAAVGSLSA TLVGRLAMGP
101: ACDLLGPRRA SGLASLLAAL AVAVTAVTAS SPTGFVALRF VAGLSLANFV ANQHWMSGIF APSAVGLANA VAAGWANVGS AAAQLVMPLA YELVLRLGVP
201: ITVAWRVTYL ILPCALLITT GLAVLAFPYD DLPHGAGVGG GAKTTGKSFW KVVRGGVSNY RAWVLALTYG YCYGVELIME NVAADFFRKR FHLPMEAAGA
301: AAACFGAMNA VARPAGGVAS DAIARLFGMR GRLWLLWAVQ TAGAALCVLV GRMGAVEAPS LAATMAVMVA CAAFVQAASG LTFGIVPFVS KRSLGVVSGM
401: TASGGAVGAI VTNRLFFSGS RYTIEEAISL TGAASLVCTL PLALVHFPRH GGMLCGPTDV GAGAGDGDAE YDDNDSAGDY MLLK

Best Arabidopsis Sequence Match ( AT1G12940.1 )
(BLAST)

001: MEVEGKGGEA GTTTTTAPRR FALPVDAENK ATTFRLFSVA KPHMRAFHLS WFQFFCCFVS TFAAPPLLPV IRENLNLTAT DIGNAGIASV SGAVFARIVM
101: GTACDLFGPR LASAALTLST APAVYFTAGI KSPIGFIMVR FFAGFSLATF VSTQFWMSSM FSGPVVGSAN GIAAGWGNLG GGATQLIMPI VFSLIRNMGA
201: TKFTAWRIAF FIPGLFQTLS AFAVLLFGQD LPDGDYWAMH KSGEREKDDV GKVISNGIKN YRGWITALAY GYCFGVELTI DNIIAEYFFD RFHLKLQTAG
301: IIAASFGLAN FFARPGGGIF SDFMSRRFGM RGRLWAWWIV QTSGGVLCAC LGQISSLTVS IIVMLVFSVF VQAACGLTFG VVPFISRRSL GVVSGMTGAG
401: GNVGAVLTQL IFFKGSTYTR ETGITLMGVM SIACSLPICL IYFPQWGGMF CGPSSKKVTE EDYYLAEWND EEKEKNLHIG SQKFAETSIS ERGRATTTHP
501: QT

Arabidopsis Description

NRT2.5High affinity nitrate transporter 2.5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.