CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
mitochondrion 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, peroxisome, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
EES03354
EES19575
KXG22060
KXG22062
KXG22064
OQU87011

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32650.1	EES03354	AT2G26650.1	12678562
AT4G32650.1	EES03354	AT2G26650.1	15299147
AT4G32650.1	EES19575	AT4G22200.1	12678562
AT4G32650.1	KXG22060	AT4G22200.1	12678562
AT4G32650.1	KXG22062	AT4G22200.1	12678562
AT4G32650.1	KXG22064	AT4G22200.1	12678562
AT4G32650.1	OQU87011	AT5G14570.1	15299147

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016987_P001	Maize	plasma membrane	84.36	86.08
Os01t0718700-00	Rice	endoplasmic reticulum, plasma membrane	34.61	55.76
HORVU3Hr1G068040.1	Barley	plasma membrane	34.78	48.83
OQU87429	Sorghum	mitochondrion	49.58	47.68
Os06t0254200-00	Rice	plasma membrane, plastid	47.92	47.21
TraesCS3D01G246300.1	Wheat	plastid	45.92	46.39
Os04t0117500-00	Rice	plasma membrane	21.8	45.8
TraesCS3A01G245200.1	Wheat	mitochondrion	44.59	44.59
GSMUA_Achr1P05260_001	Banana	plasma membrane	44.43	42.18
GSMUA_Achr5P09770_001	Banana	plasma membrane	45.09	41.5
VIT_04s0008g04510.t01	Wine grape	cytosol, mitochondrion, peroxisome, plasma membrane	43.09	41.05
Solyc01g010080.2.1	Tomato	plastid	42.26	40.45
PGSC0003DMT400065964	Potato	cytosol, plastid	42.43	40.41
PGSC0003DMT400037608	Potato	plastid	41.26	39.81
KRH61886	Soybean	plasma membrane	40.6	39.04
Solyc08g068000.1.1	Tomato	plasma membrane	40.93	38.26
Bra037049.1-P	Field mustard	plastid	40.93	38.14
CDY13496	Canola	plastid	40.93	37.5
TraesCS3B01G274500.1	Wheat	plastid	40.27	37.4
AT4G32650.1	Thale cress	plastid	41.1	37.31
KRH52547	Soybean	cytosol	36.44	36.87
CDX68872	Canola	plastid	39.27	36.25
Bra011367.1-P	Field mustard	plastid	39.1	36.1
CDX75267	Canola	plastid	39.1	36.1
CDX72366	Canola	plastid	37.77	35.19
EES01496	Sorghum	mitochondrion, plasma membrane	30.95	35.09
EES06576	Sorghum	plasma membrane	37.1	30.59
EES03354	Sorghum	plastid	37.27	25.31
EES19575	Sorghum	plastid	34.78	24.97
KXG22060	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	27.95	24.17
KXG22064	Sorghum	plastid	33.78	24.11
KXG22062	Sorghum	plastid	6.32	23.9
EER95927	Sorghum	plastid	34.61	22.63
EES10868	Sorghum	cytosol	22.96	19.03
KXG19708	Sorghum	cytosol	24.63	17.33
CDY61287	Canola	plasma membrane	14.97	16.98
Bra021279.1-P	Field mustard	nucleus	13.48	14.16
CDY10020	Canola	cytosol	5.82	10.26

Protein Annotations

Gene3D:1.10.287.70	Gene3D:2.60.120.10	MapMan:24.3.2.2	EntrezGene:8070562	UniProt:C5XVS6	EnsemblPlants:EES07044
ProteinID:EES07044	ProteinID:EES07044.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005249
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810	GO:GO:0006811
GO:GO:0006813	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0034220
GO:GO:0042391	GO:GO:0055085	GO:GO:0071805	InterPro:IPR000595	InterPro:IPR014710	InterPro:IPR021789
InterPro:Ion_trans_dom	InterPro:KHA_dom	InterPro:K_chnl_volt-dep_EAG/ELK/ERG	PFAM:PF00027	PFAM:PF00520	PFAM:PF11834
PRINTS:PR01463	PFscan:PS50042	PFscan:PS51490	PANTHER:PTHR10217	PANTHER:PTHR10217:SF537	InterPro:RmlC-like_jellyroll
SMART:SM00100	EnsemblPlantsGene:SORBI_3004G193100	SUPFAM:SSF51206	SUPFAM:SSF81324	TMHMM:TMhelix	UniParc:UPI0001A85D50
RefSeq:XP_002454068.1	InterPro:cNMP-bd-like	InterPro:cNMP-bd_dom	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:54494203..54496008

Molecular Weight (calculated)

65805.4 Da

IEP (calculated)

7.578

GRAVY (calculated)

0.136

Length

601 amino acids

Sequence
(BLAST)

001: MRSSAAAQPL VEPGAAAGYG WWQALLVAPV LYSAWASPFE LAVERAATLP LLVADMVADV FFAVDIAASI FVACLKPRGS SSTASLFYDD RKKADVRHLR
101: LRPWTLAMDV ASTIPFQAIY HLAAAAWGAA AAWSSPFRFL SLLRLWRLRR VSELFAKLEK DVRLNYSWTR LVKLVGVTLL AVHAAACVHL WMASHYSGPK
201: ERTWLGRGFE TRSVWAGYTR AVYWSVATLT TVGYGDLHPA NPGEMAFAVL YVLFNLGLGA YIVGNTTNLA ASGSTAALAL RDTLRGVSMF GAVNRLPEAL
301: TEQMAETVQL NFDMTEQLLQ HQQLLSEMPR AVRSGIAQHL FRDTVEGAYL FRGVSEGLVA DLVADATAQF FPAKADIVKQ NETPTECYII VSGSVDVLTM
401: TTAADGTETE TVVSRACRCG IAGEIGVMLN IPQPFTVRCR RLTQAVRVSQ GHLLRVVRPH TADAARVLCN FVQHLGSPVW KVAREEAPLF REIADQIEAE
501: AATAASMSGR RTSEMFEPEG LEEADDELRM SLRREAKRRV VIHHKSENAA GKLLCLPGSM RELRSVAEAK FRKVVTTVLT VDGAEVEGID VLRDGDHLVV
601: C

Best Arabidopsis Sequence Match ( AT2G26650.1 )
(BLAST)

001: MRGGALLCGQ VQDEIEQLSR ESSHFSLSTG ILPSLGARSN RRVKLRRFVV SPYDHKYRIW EAFLVVLVVY TAWVSPFEFG FLRKPRPPLS ITDNIVNAFF
101: AIDIIMTFFV GYLDKSTYLI VDDRKQIAFK YLRSWFLLDL VSTIPSEAAM RISSQSYGLF NMLRLWRLRR VGALFARLEK DRNFNYFWVR CAKLVCVTLF
201: AVHCAACFYY LIAARNSNPA KTWIGANVAN FLEESLWMRY VTSMYWSITT LTTVGYGDLH PVNTKEMIFD IFYMLFNLGL TAYLIGNMTN LVVHGTSRTR
301: NFRDTIQAAS NFAHRNHLPP RLQDQMLAHL CLKYRTDSEG LQQQETLDAL PKAIRSSISH FLFYSLMDKV YLFRGVSNDL LFQLVSEMKA EYFPPKEDVI
401: LQNEAPTDFY ILVNGTADLV DVDTGTESIV REVKAGDIIG EIGVLCYRPQ LFTVRTKRLC QLLRMNRTTF LNIIQANVGD GTIIMNNLLQ HLKEMNDPVM
501: TNVLLEIENM LARGKMDLPL NLCFAAIRED DLLLHQLLKR GLDPNESDNN GRTPLHIAAS KGTLNCVLLL LEYHADPNCR DAEGSVPLWE AMVEGHEKVV
601: KVLLEHGSTI DAGDVGHFAC TAAEQGNLKL LKEIVLHGGD VTRPRATGTS ALHTAVCEEN IEMVKYLLEQ GADVNKQDMH GWTPRDLAEQ QGHEDIKALF
701: REKLHERRVH IETSSSVPIL KTGIRFLGRF TSEPNIRPAS REVSFRIRET RARRKTNNFD NSLFGILANQ SVPKNGLATV DEGRTGNPVR VTISCAEKDD
801: IAGKLVLLPG SFKELLELGS NKFGIVATKV MNKDNNAEID DVDVIRDGDH LIFATDS

Arabidopsis Description

AKT1Potassium channel AKT1 [Source:UniProtKB/Swiss-Prot;Acc:Q38998]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.