CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 2
vacuole 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92493
EER96576
EES01496
EES01744
EES03354
EES06576
EES07044
EES19575
KXG22060
KXG22062
KXG22064
KXG22152
KXG35986
OQU87429

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22200.1	EES03354	AT2G26650.1	12678562
AT4G22200.1	EES03354	AT2G26650.1	15299147
AT4G22200.1	EER92493	AT3G11410.1	11181729
AT4G22200.1	EER96576	AT3G11410.1	11181729
AT4G22200.1	EES01744	AT3G11410.1	11181729
AT4G22200.1	KXG22152	AT3G11410.1	11181729
AT4G22200.1	KXG35986	AT3G11410.1	11181729
AT4G22200.1	EER92493	AT3G11410.1	12034902
AT4G22200.1	EER96576	AT3G11410.1	12034902
AT4G22200.1	EES01744	AT3G11410.1	12034902
AT4G22200.1	KXG22152	AT3G11410.1	12034902
AT4G22200.1	KXG35986	AT3G11410.1	12034902
AT4G22200.1	EES19575	AT4G22200.1	12678562
AT4G22200.1	KXG22060	AT4G22200.1	12678562
AT4G22200.1	KXG22062	AT4G22200.1	12678562
AT4G22200.1	KXG22064	AT4G22200.1	12678562
AT4G22200.1	EES19575	AT4G22200.1	15299147
AT4G22200.1	KXG22060	AT4G22200.1	15299147
AT4G22200.1	KXG22062	AT4G22200.1	15299147
AT4G22200.1	KXG22064	AT4G22200.1	15299147
AT4G22200.1	EES19575	AT4G22200.1	17085433
AT4G22200.1	KXG22060	AT4G22200.1	17085433
AT4G22200.1	KXG22062	AT4G22200.1	17085433
AT4G22200.1	KXG22064	AT4G22200.1	17085433
AT4G22200.1	EES07044	AT4G32650.1	12678562
AT4G22200.1	OQU87429	AT4G32650.1	12678562
AT4G22200.1	EES01496	AT5G46240.1	12034902
AT4G22200.1	EES06576	AT5G46240.1	12034902
AT4G22200.1	EES01496	AT5G46240.1	15299147
AT4G22200.1	EES06576	AT5G46240.1	15299147
AT4G22200.1	EES01496	AT5G46240.1	17085433
AT4G22200.1	EES06576	AT5G46240.1	17085433

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0428700-01	Rice	cytosol, plastid	63.31	77.74
EES19575	Sorghum	plastid	89.35	74.19
KXG22064	Sorghum	plastid	89.64	73.99
Zm00001d038252_P001	Maize	plastid	91.37	67.99
TraesCS1B01G278600.1	Wheat	plasma membrane, plastid	77.27	62.08
TraesCS1D01G267800.1	Wheat	plastid	77.12	61.97
TraesCS1A01G267900.1	Wheat	plastid	76.98	61.64
HORVU1Hr1G065250.2	Barley	plastid	76.55	59.91
TraesCS6B01G081300.1	Wheat	plastid	70.07	58.25
GSMUA_Achr6P24240_001	Banana	cytosol	62.16	54.0
GSMUA_Achr6P07280_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	60.72	51.21
VIT_12s0034g02240.t01	Wine grape	cytosol, mitochondrion, plasma membrane	61.15	50.66
KRH26375	Soybean	cytosol	60.0	50.18
KRH44060	Soybean	cytosol	59.28	49.4
AT4G22200.1	Thale cress	cytosol, plastid, vacuole	55.54	48.13
CDX79135	Canola	plasma membrane	54.53	48.1
PGSC0003DMT400061090	Potato	cytosol	56.4	47.57
Solyc01g104030.2.1	Tomato	cytosol	57.27	47.55
PGSC0003DMT400062100	Potato	plasma membrane	56.83	46.91
Solyc10g024360.1.1	Tomato	cytosol	55.83	46.14
Bra013599.1-P	Field mustard	cytosol	54.53	43.97
CDX82921	Canola	cytosol	54.39	43.85
EES01496	Sorghum	mitochondrion, plasma membrane	27.77	36.42
EES06576	Sorghum	plasma membrane	33.96	32.37
EES03354	Sorghum	plastid	38.7	30.4
EER95927	Sorghum	plastid	36.98	27.97
EES07044	Sorghum	cytosol, mitochondrion, peroxisome, plasma membrane	24.17	27.95
OQU87429	Sorghum	mitochondrion	24.17	26.88
EES10868	Sorghum	cytosol	27.19	26.07
KXG19708	Sorghum	cytosol	29.21	23.77
KXG22062	Sorghum	plastid	1.73	7.55

Protein Annotations

Gene3D:1.10.287.70	Gene3D:1.25.40.20	Gene3D:2.60.120.10	MapMan:24.3.2.2	UniProt:A0A1B6P8J7	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0034220	GO:GO:0055085	InterPro:IPR000595	InterPro:IPR002110	InterPro:IPR014710
InterPro:IPR020683	InterPro:IPR021789	InterPro:IPR036770	InterPro:Ion_trans_dom	InterPro:KHA_dom	EnsemblPlants:KXG22060
ProteinID:KXG22060	ProteinID:KXG22060.1	PFAM:PF00027	PFAM:PF00520	PFAM:PF11834	PFAM:PF12796
PFscan:PS50042	PFscan:PS50088	PFscan:PS50297	PFscan:PS51490	PANTHER:PTHR10217	PANTHER:PTHR10217:SF493
InterPro:RmlC-like_jellyroll	SMART:SM00100	SMART:SM00248	EnsemblPlantsGene:SORBI_3009G146800	SUPFAM:SSF48403	SUPFAM:SSF51206
SUPFAM:SSF81324	TMHMM:TMhelix	UniParc:UPI00081AE334	InterPro:cNMP-bd-like	InterPro:cNMP-bd_dom	SEG:seg

Description

hypothetical protein

Coordinates

chr9:-:50370739..50377457

Molecular Weight (calculated)

77128.9 Da

IEP (calculated)

6.952

GRAVY (calculated)

-0.099

Length

695 amino acids

Sequence
(BLAST)

001: MDVASTIPFQ GLAYLVTGEV RENAAYSMLG VLRLWRLRRV KQFFTRLEKD IRFSYFWIRC ARLVAVTLFL VHCAGCLYYL IADRYPHREK TWIGAVIPNF
101: RQASLRIRYI SSIYWSITTM TTVGYGDLHA ENTVEMIFNI FYMLFNLGLT AYLIGNMTNL VVEGTRRTME FRNSIRAASS FVGRNHLPPR LKQQILAYMC
201: LKFRAESLNQ QQLMDQLPKS ICKSICEHLF VPVVKDVYLF NGVSREMLLS LVTKMKPEYI PPKEDVIVQN EAPDDVYVVV SGEVEVILFN GIDEHVKATL
301: GTRDIFGEVS ALSDRAQAFT FRTRTLSQLL RLKQATLKEA MQSRPEDSVV IIKNFLKHQV EMHGMKADDL LGDNTGEHDD DANVLTVAAM GNSGLLEDLL
401: RAGKDADVGD AKGRTALHIA ASNGYEDCVL VLLKHACNVN IKDAQGNTAM WNAIAAGHHK IFNILYHFAR ASNPHAGGDV LCFAARRGDL GALRELLKLG
501: LDVDSEDHDG ATALRVAMAE GHADAARFLI MNGASVDKAS LDDDGSGSGA ARLTMSPTEL RELLQKRELG HSITIVDSPA VIPDGGSSGH SRPGRLQGTS
601: SDNQCWPRVS VYKGHPFLRN RSSEAGKLIN LPGTLEEFKA IVGEKLKVDA KKGLIVNDEG AEIDSIDVIR DNDKLFVVTE EDLRRLASMD SLSSS

Best Arabidopsis Sequence Match ( AT4G22200.1 )
(BLAST)

001: MDLKYSASHC NLSSDMKLRR FHQHRGKGRE EEYDASSLSL NNLSKLILPP LGVASYNQNH IRSSGWIISP MDSRYRCWEF YMVLLVAYSA WVYPFEVAFL
101: NSSPKRNLCI ADNIVDLFFA VDIVLTFFVA YIDERTQLLV REPKQIAVRY LSTWFLMDVA STIPFDAIGY LITGTSTLNI TCNLLGLLRF WRLRRVKHLF
201: TRLEKDIRYS YFWIRCFRLL SVTLFLVHCA GCSYYLIADR YPHQGKTWTD AIPNFTETSL SIRYIAAIYW SITTMTTVGY GDLHASNTIE MVFITVYMLF
301: NLGLTAYLIG NMTNLVVEGT RRTMEFRNSI EAASNFVNRN RLPPRLKDQI LAYMCLRFKA ESLNQQHLID QLPKSIYKSI CQHLFLPSVE KVYLFKGVSR
401: EILLLLVSKM KAEYIPPRED VIMQNEAPDD VYIIVSGEVE IIDSEMERES VLGTLRCGDI FGEVGALCCR PQSYTFQTKS LSQLLRLKTS FLIETMQIKQ
501: QDNATMLKNF LQHHKKLSNL DIGDLKAQQN GENTDVVPPN IASNLIAVVT TGNAALLDEL LKAKLSPDIT DSKGKTPLHV AASRGYEDCV LVLLKHGCNI
601: HIRDVNGNSA LWEAIISKHY EIFRILYHFA AISDPHIAGD LLCEAAKQNN VEVMKALLKQ GLNVDTEDHH GVTALQVAMA EDQMDMVNLL ATNGADVVCV
701: NTHNEFTPLE KLRVVEEEEE EERGRVSIYR GHPLERRERS CNEAGKLILL PPSLDDLKKI AGEKFGFDGS ETMVTNEDGA EIDSIEVIRD NDKLYFVVNK
801: II

Arabidopsis Description

AKT2Potassium channel AKT2/3 [Source:UniProtKB/Swiss-Prot;Acc:Q38898]
SUBAcon: [plastid,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.