Factsheet for PGSC0003DMT400061090

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002746
PGSC0003DMT400024866
PGSC0003DMT400024968
PGSC0003DMT400037608
PGSC0003DMT400043146
PGSC0003DMT400054318
PGSC0003DMT400054339
PGSC0003DMT400061090
PGSC0003DMT400062100
PGSC0003DMT400065964
PGSC0003DMT400069947

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22200.1	PGSC0003DMT400002746	AT2G26650.1	12678562
AT4G22200.1	PGSC0003DMT400002746	AT2G26650.1	15299147
AT4G22200.1	PGSC0003DMT400043146	AT3G11410.1	11181729
AT4G22200.1	PGSC0003DMT400069947	AT3G11410.1	11181729
AT4G22200.1	PGSC0003DMT400043146	AT3G11410.1	12034902
AT4G22200.1	PGSC0003DMT400069947	AT3G11410.1	12034902
AT4G22200.1	PGSC0003DMT400061090	AT4G22200.1	12678562
AT4G22200.1	PGSC0003DMT400062100	AT4G22200.1	12678562
AT4G22200.1	PGSC0003DMT400061090	AT4G22200.1	15299147
AT4G22200.1	PGSC0003DMT400062100	AT4G22200.1	15299147
AT4G22200.1	PGSC0003DMT400061090	AT4G22200.1	17085433
AT4G22200.1	PGSC0003DMT400062100	AT4G22200.1	17085433
AT4G22200.1	PGSC0003DMT400037608	AT4G32650.1	12678562
AT4G22200.1	PGSC0003DMT400065964	AT4G32650.1	12678562
AT4G22200.1	PGSC0003DMT400024866	AT5G46240.1	12034902
AT4G22200.1	PGSC0003DMT400024968	AT5G46240.1	12034902
AT4G22200.1	PGSC0003DMT400054318	AT5G46240.1	12034902
AT4G22200.1	PGSC0003DMT400054339	AT5G46240.1	12034902
AT4G22200.1	PGSC0003DMT400024866	AT5G46240.1	15299147
AT4G22200.1	PGSC0003DMT400024968	AT5G46240.1	15299147
AT4G22200.1	PGSC0003DMT400054318	AT5G46240.1	15299147
AT4G22200.1	PGSC0003DMT400054339	AT5G46240.1	15299147
AT4G22200.1	PGSC0003DMT400024866	AT5G46240.1	17085433
AT4G22200.1	PGSC0003DMT400024968	AT5G46240.1	17085433
AT4G22200.1	PGSC0003DMT400054318	AT5G46240.1	17085433
AT4G22200.1	PGSC0003DMT400054339	AT5G46240.1	17085433

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g104030.2.1	Tomato	cytosol	97.21	95.7
PGSC0003DMT400062100	Potato	plasma membrane	76.46	74.82
VIT_12s0034g02240.t01	Wine grape	cytosol, mitochondrion, plasma membrane	68.93	67.7
KRH44060	Soybean	cytosol	64.93	64.15
KRH26375	Soybean	cytosol	64.56	64.02
CDX79135	Canola	plasma membrane	61.04	63.83
AT4G22200.1	Thale cress	cytosol, plastid, vacuole	61.41	63.09
GSMUA_Achr6P24240_001	Banana	cytosol	58.74	60.5
Bra013599.1-P	Field mustard	cytosol	61.04	58.35
CDX82921	Canola	cytosol	60.56	57.89
GSMUA_Achr6P07280_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	57.4	57.4
KXG22060	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	47.57	56.4
Zm00001d010210_P001	Maize	cytosol, endoplasmic reticulum, plasma membrane	46.97	55.36
EES19575	Sorghum	plastid	54.98	54.12
Os05t0428700-01	Rice	cytosol, plastid	37.14	54.06
TraesCS1D01G267800.1	Wheat	plastid	56.43	53.76
KXG22064	Sorghum	plastid	54.37	53.21
TraesCS1B01G278600.1	Wheat	plasma membrane, plastid	55.7	53.06
TraesCS1A01G267900.1	Wheat	plastid	55.83	53.0
TraesCS6B01G081300.1	Wheat	plastid	53.76	52.99
HORVU1Hr1G065250.2	Barley	plastid	55.7	51.69
KXG22062	Sorghum	plastid	9.95	51.57
Zm00001d038252_P001	Maize	plastid	54.73	48.29
Zm00001d010209_P001	Maize	plastid	7.77	45.71
PGSC0003DMT400054339	Potato	plasma membrane	35.68	42.73
PGSC0003DMT400024968	Potato	cytosol, plasma membrane, vacuole	34.34	41.07
PGSC0003DMT400037608	Potato	plastid	30.22	39.97
PGSC0003DMT400065964	Potato	cytosol, plastid	30.22	39.46
PGSC0003DMT400091020	Potato	peroxisome, plasma membrane	29.13	39.28
PGSC0003DMT400002746	Potato	plasma membrane	41.26	38.9
PGSC0003DMT400074787	Potato	cytosol, nucleus, plasma membrane	38.71	37.05
PGSC0003DMT400054318	Potato	nucleus	12.38	32.38
PGSC0003DMT400034446	Potato	cytosol	27.18	27.05
PGSC0003DMT400024866	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	9.1	25.95

Protein Annotations

Gene3D:1.10.287.70	Gene3D:1.25.40.20	Gene3D:2.60.120.10	MapMan:24.3.2.2	ProteinID:ABD93552	ProteinID:ABD93552.2
InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	ProteinID:CAA70947	ProteinID:CAA70947.1	EMBL:DQ423093
GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005244	GO:GO:0005249	GO:GO:0005267
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006810	GO:GO:0006811	GO:GO:0006813
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0034765	GO:GO:0055085
GO:GO:0071805	InterPro:IPR000595	InterPro:IPR002110	InterPro:IPR014710	InterPro:IPR020683	InterPro:IPR021789
InterPro:IPR036770	InterPro:Ion_trans_dom	InterPro:KHA_dom	InterPro:K_chnl_volt-dep_EAG/ELK/ERG	UniProt:M1C714	PFAM:PF00027
PFAM:PF00520	PFAM:PF11834	PFAM:PF12796	EnsemblPlantsGene:PGSC0003DMG400023769	PGSC:PGSC0003DMG400023769	EnsemblPlants:PGSC0003DMT400061090
PRINTS:PR01415	PRINTS:PR01463	PFscan:PS50042	PFscan:PS50088	PFscan:PS50297	PFscan:PS51490
PANTHER:PTHR10217	PANTHER:PTHR10217:SF493	InterPro:RmlC-like_jellyroll	SMART:SM00100	SMART:SM00248	SUPFAM:SSF48403
SUPFAM:SSF51206	SUPFAM:SSF81324	TMHMM:TMhelix	UniParc:UPI000295D3FB	EMBL:Y09818	InterPro:cNMP-bd-like
InterPro:cNMP-bd_dom	SEG:seg	:	:	:	:

Description

Potassium channel NKT2 [Source:PGSC_GENE;Acc:PGSC0003DMG400023769]

Coordinates

chr1:-:80681088..80687276

Molecular Weight (calculated)

94267.2 Da

IEP (calculated)

7.006

GRAVY (calculated)

-0.128

Length

824 amino acids

Sequence
(BLAST)

001: MIVEDSKKEQ HVVQDDNSHE SSNSATSIDD LSFRNLSKLI LPPLGSNGSN TNQTHEKGFI ITPMDSRYRC WESLMVIMVA YSAWVCPFEI AFMRSNPNTT
101: LYITDNVVDI FFAADIFLTF FVAYIDATTQ LLVRDRRKIA IRYLSTWFIM DVASTIPFDL LALLLTGKHQ VGVSYSVLGM LRFWRLRRVK QFFTRLEKDM
201: RFSYFWVRCA RLLFVTLLTV HCAGCLYYLL ADRYPHQGDT WLRTMNPNYK ETSLVIRYIA ALYWSITTMT TVGYGDLHAV NTLEMVFIIF YMLFNLGLTA
301: YIIGNMTNLV VEGTRRTMEF RNSIEAASNF VCRNHLPPRL KDQILAYMCL RFRAESLNQQ ELIEQLPKTI CKSIRHHLFL PTVEKVYLFK GVTREILLLL
401: VADMKAEYIP PREDVIMQNE SPDELYIIVS GEVEMLESEM ENEQTVWTFK SGDMIGEVGA FCCRPQSYTY RTKTLSQLLK IRTSNLIEAM KTRQEDNIIM
501: IKNFLQHHKN LKGLRLGDLL HGVGGDYGDP NMYVNLLTVA STGNATFLEE LLKAKLDPDI GDAQGRTPLH IAASKGHEEC VMVLLRHGCN INLRDVNGHT
601: ALWEAIAAKH HSTFHVLYHW ASVSDPYIAG DLLCTAARKN DLTVMKELLK HGLQVDSKDR DGSTAIHVAL EENLEDMVKL LLMNGAEIND KLKYKLSSMN
701: LSDMLQKREV GHRVMVSDTM DEVAQKWREQ VKQHNTESTR DQSSFRVSIY RSHPVIRRRT HCSEPGKLIK LPNSLAELKI IAGQKFGFDA TNAAVTDQEG
801: SEIDSIEVIR DNDKLFIVEG PNCL

Best Arabidopsis Sequence Match ( AT4G22200.1 )
(BLAST)

001: MDLKYSASHC NLSSDMKLRR FHQHRGKGRE EEYDASSLSL NNLSKLILPP LGVASYNQNH IRSSGWIISP MDSRYRCWEF YMVLLVAYSA WVYPFEVAFL
101: NSSPKRNLCI ADNIVDLFFA VDIVLTFFVA YIDERTQLLV REPKQIAVRY LSTWFLMDVA STIPFDAIGY LITGTSTLNI TCNLLGLLRF WRLRRVKHLF
201: TRLEKDIRYS YFWIRCFRLL SVTLFLVHCA GCSYYLIADR YPHQGKTWTD AIPNFTETSL SIRYIAAIYW SITTMTTVGY GDLHASNTIE MVFITVYMLF
301: NLGLTAYLIG NMTNLVVEGT RRTMEFRNSI EAASNFVNRN RLPPRLKDQI LAYMCLRFKA ESLNQQHLID QLPKSIYKSI CQHLFLPSVE KVYLFKGVSR
401: EILLLLVSKM KAEYIPPRED VIMQNEAPDD VYIIVSGEVE IIDSEMERES VLGTLRCGDI FGEVGALCCR PQSYTFQTKS LSQLLRLKTS FLIETMQIKQ
501: QDNATMLKNF LQHHKKLSNL DIGDLKAQQN GENTDVVPPN IASNLIAVVT TGNAALLDEL LKAKLSPDIT DSKGKTPLHV AASRGYEDCV LVLLKHGCNI
601: HIRDVNGNSA LWEAIISKHY EIFRILYHFA AISDPHIAGD LLCEAAKQNN VEVMKALLKQ GLNVDTEDHH GVTALQVAMA EDQMDMVNLL ATNGADVVCV
701: NTHNEFTPLE KLRVVEEEEE EERGRVSIYR GHPLERRERS CNEAGKLILL PPSLDDLKKI AGEKFGFDGS ETMVTNEDGA EIDSIEVIRD NDKLYFVVNK
801: II

Arabidopsis Description

AKT2Potassium channel AKT2/3 [Source:UniProtKB/Swiss-Prot;Acc:Q38898]
SUBAcon: [plastid,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.