Factsheet for PGSC0003DMT400069947

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400005378
PGSC0003DMT400025895
PGSC0003DMT400026521
PGSC0003DMT400028658
PGSC0003DMT400041080
PGSC0003DMT400061090
PGSC0003DMT400062100
PGSC0003DMT400075056
PGSC0003DMT400075340
PGSC0003DMT400077008

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11410.1	PGSC0003DMT400075340	AT2G26040.1	19407142
AT3G11410.1	PGSC0003DMT400077008	AT2G26040.1	19407142
AT3G11410.1	PGSC0003DMT400025895	AT2G33610.1	19033529
AT3G11410.1	PGSC0003DMT400028658	AT2G38310.1	19407142
AT3G11410.1	PGSC0003DMT400041080	AT2G38310.1	19407142
AT3G11410.1	PGSC0003DMT400075056	AT2G38310.1	19407142
AT3G11410.1	PGSC0003DMT400005378	AT4G17870.1	19407142
AT3G11410.1	PGSC0003DMT400061090	AT4G22200.1	11181729
AT3G11410.1	PGSC0003DMT400062100	AT4G22200.1	11181729
AT3G11410.1	PGSC0003DMT400061090	AT4G22200.1	12034902
AT3G11410.1	PGSC0003DMT400062100	AT4G22200.1	12034902
AT3G11410.1	PGSC0003DMT400026521	AT5G45870.1	19407142
AT3G11410.1	PGSC0003DMT400005378	AT5G46790.1	19407142

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g052980.2.1	Tomato	nucleus	91.87	93.89
PGSC0003DMT400043146	Potato	nucleus	65.55	66.83
CDY67227	Canola	cytosol	58.61	66.04
CDY67257	Canola	nucleus	58.13	65.5
Bra002038.1-P	Field mustard	nucleus	58.61	64.47
VIT_13s0019g02200.t01	Wine grape	plastid	61.24	64.0
GSMUA_AchrUn_...	Banana	cytosol	43.3	63.96
AT3G11410.1	Thale cress	cytosol	60.29	63.16
CDY08530	Canola	nucleus	59.33	63.1
Bra034845.1-P	Field mustard	nucleus	60.05	62.91
CDY01017	Canola	nucleus	58.61	62.34
PGSC0003DMT400077989	Potato	cytosol	57.18	58.29
KXG35986	Sorghum	cytosol, peroxisome, plastid	28.23	58.13
KRH73525	Soybean	cytosol, mitochondrion, peroxisome, plastid	14.11	55.66
GSMUA_Achr5P29000_001	Banana	cytosol	50.72	55.5
GSMUA_Achr11P...	Banana	cytosol	52.39	55.44
GSMUA_Achr6P15180_001	Banana	cytosol	47.37	53.51
Zm00001d005609_P001	Maize	cytosol, mitochondrion, nucleus, plastid	44.5	53.14
EER96576	Sorghum	cytosol	44.98	52.66
TraesCS5B01G182000.1	Wheat	peroxisome	43.78	52.44
TraesCS3A01G362200.1	Wheat	nucleus, plastid	49.04	52.43
Zm00001d020100_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	44.74	52.23
TraesCS5D01G188600.1	Wheat	peroxisome	43.54	52.15
TraesCS5A01G183600.1	Wheat	peroxisome	43.54	52.15
HORVU3Hr1G085930.3	Barley	nucleus, plastid	48.8	51.91
TraesCS3D01G355900.1	Wheat	plastid	49.04	51.64
HORVU4Hr1G060370.1	Barley	nucleus	48.8	51.0
Os09t0325700-01	Rice	cytosol	43.54	50.84
Os03t0268600-01	Rice	nucleus	49.04	50.74
Zm00001d042886_P001	Maize	nucleus	49.52	50.74
Zm00001d028574_P001	Maize	nucleus	47.37	50.0
EES01744	Sorghum	plastid	49.28	50.0
Os01t0846300-01	Rice	cytosol, mitochondrion, nucleus, plastid	49.52	50.0
TraesCS4B01G210100.1	Wheat	nucleus	48.33	49.75
EER92493	Sorghum	nucleus	47.61	49.63
PGSC0003DMT400019552	Potato	cytosol, peroxisome, plastid	12.68	49.53
Zm00001d012401_P001	Maize	cytosol, mitochondrion, nucleus, plastid	48.8	49.39
TraesCS4D01G210900.1	Wheat	nucleus	48.33	49.27
TraesCS4A01G094300.1	Wheat	nucleus	47.85	48.9
PGSC0003DMT400094534	Potato	cytosol	23.21	48.5
TraesCS3B01G394600.3	Wheat	plastid	49.28	48.13
PGSC0003DMT400090149	Potato	cytosol	34.45	43.37
KXG22152	Sorghum	nucleus	48.09	43.32
PGSC0003DMT400091100	Potato	cytosol, nucleus, plastid	34.69	42.4
PGSC0003DMT400021210	Potato	cytosol, nucleus, peroxisome	8.61	40.0
PGSC0003DMT400023517	Potato	nucleus	36.84	38.6
PGSC0003DMT400050448	Potato	cytosol	33.25	34.92
PGSC0003DMT400075333	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	37.56	29.29
PGSC0003DMT400006608	Potato	plastid	35.89	27.52
PGSC0003DMT400046382	Potato	cytosol	35.17	27.02
PGSC0003DMT400078131	Potato	golgi, vacuole	19.38	25.88
PGSC0003DMT400057134	Potato	mitochondrion	14.11	20.21
PGSC0003DMT400049695	Potato	extracellular	2.87	10.91

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:102596252	MapMan:18.4.24.2.1	Gene3D:3.60.40.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0004721	GO:GO:0004722	GO:GO:0005488	GO:GO:0006464	GO:GO:0006470
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0043169
GO:GO:0046872	InterPro:IPR001932	InterPro:IPR036457	UniProt:M1CLG0	PFAM:PF00481	EnsemblPlantsGene:PGSC0003DMG400027196
PGSC:PGSC0003DMG400027196	EnsemblPlants:PGSC0003DMT400069947	InterPro:PP2C	InterPro:PP2C_BS	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom
ScanProsite:PS01032	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF518	SMART:SM00332	SUPFAM:SSF81606
UniParc:UPI000296E409	RefSeq:XP_006355694.1	SEG:seg	:	:	:

Description

Protein phosphatase 2C [Source:PGSC_GENE;Acc:PGSC0003DMG400027196]

Coordinates

chr5:-:48266485..48268406

Molecular Weight (calculated)

45259.5 Da

IEP (calculated)

5.509

GRAVY (calculated)

-0.318

Length

418 amino acids

Sequence
(BLAST)

001: MAGMCCGVNI AETEATAPVE PSSEAARRRR MGIHQFRFVP TDAAASVAVQ ENGRKRHRIE KVIDNKKRQK LETSVTISLS PPPVAVVVAD EQKGKDNEVL
101: DLSESGSQSV EIEPDLPKFG ATSVCGRRRD MEDAVAIHPS FCKENSESSS NLHFFGVYDG HGCSHVAMKC KDRMHEIVKN EVEKEETPWK EAMIQSFSLM
201: DKEVVNYSST LRSSTSGSNC RCELQTPQCD AVGSTAVVAV VTPDKIIVSN CGDSRAVLCR NGVAIPLSVD HKPDRPDELN RIQEAGGRVI YWDGARVLGV
301: LAMSRAIGDN YLKPYVISEP EVTITDRTNE DECLILASDG LWDVVSNETA CGVARMCLQS RRPPSPAGSP GNDITVTGAG ESSDKACSDA SILLTKLALA
401: RHSSDNVSVV VVDLRKNV

Best Arabidopsis Sequence Match ( AT3G11410.1 )
(BLAST)

001: MAGICCGVVG ETEPAAPVDS TSRASLRRRL DLLPSIKIVA DSAVAPPLEN CRKRQKRETV VLSTLPGNLD LDSNVRSENK KARSAVTNSN SVTEAESFFS
101: DVPKIGTTSV CGRRRDMEDA VSIHPSFLQR NSENHHFYGV FDGHGCSHVA EKCRERLHDI VKKEVEVMAS DEWTETMVKS FQKMDKEVSQ RECNLVVNGA
201: TRSMKNSCRC ELQSPQCDAV GSTAVVSVVT PEKIIVSNCG DSRAVLCRNG VAIPLSVDHK PDRPDELIRI QQAGGRVIYW DGARVLGVLA MSRAIGDNYL
301: KPYVIPDPEV TVTDRTDEDE CLILASDGLW DVVPNETACG VARMCLRGAG AGDDSDAAHN ACSDAALLLT KLALARQSSD NVSVVVVDLR KRRNNQASS

Arabidopsis Description

PP2CAProtein phosphatase 2C 37 [Source:UniProtKB/Swiss-Prot;Acc:P49598]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.