Factsheet for VIT_13s0019g02200.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g01270.t01
VIT_04s0008g00270.t01
VIT_04s0008g00890.t01
VIT_08s0058g00230.t01
VIT_08s0058g00470.t01
VIT_12s0034g02240.t01
VIT_13s0067g01940.t01
VIT_13s0175g00110.t01
VIT_18s0122g00670.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11410.1	VIT_04s0008g00890.t01	AT2G26040.1	19407142
AT3G11410.1	VIT_18s0122g00670.t01	AT2G33610.1	19033529
AT3G11410.1	VIT_08s0058g00470.t01	AT2G38310.1	19407142
AT3G11410.1	VIT_13s0067g01940.t01	AT2G38310.1	19407142
AT3G11410.1	VIT_02s0012g01270.t01	AT4G17870.1	19407142
AT3G11410.1	VIT_04s0008g00270.t01	AT4G17870.1	19407142
AT3G11410.1	VIT_08s0058g00230.t01	AT4G17870.1	19407142
AT3G11410.1	VIT_13s0175g00110.t01	AT4G17870.1	19407142
AT3G11410.1	VIT_12s0034g02240.t01	AT4G22200.1	11181729
AT3G11410.1	VIT_12s0034g02240.t01	AT4G22200.1	12034902
AT3G11410.1	VIT_02s0012g01270.t01	AT5G46790.1	19407142
AT3G11410.1	VIT_04s0008g00270.t01	AT5G46790.1	19407142
AT3G11410.1	VIT_08s0058g00230.t01	AT5G46790.1	19407142
AT3G11410.1	VIT_13s0175g00110.t01	AT5G46790.1	19407142

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15068	Soybean	cytosol	63.0	63.0
GSMUA_AchrUn_...	Banana	cytosol	44.5	62.9
VIT_06s0004g05460.t01	Wine grape	nucleus	61.75	62.85
Solyc05g052980.2.1	Tomato	nucleus	64.25	62.84
KRH31027	Soybean	cytosol	62.75	62.59
KRG97855	Soybean	cytosol	62.5	62.5
CDY67227	Canola	cytosol	57.0	61.46
KRH73067	Soybean	cytosol	62.5	61.43
PGSC0003DMT400069947	Potato	cytosol	64.0	61.24
CDY67257	Canola	nucleus	56.5	60.92
KXG35986	Sorghum	cytosol, peroxisome, plastid	30.5	60.1
Bra002038.1-P	Field mustard	nucleus	57.0	60.0
CDY08530	Canola	nucleus	58.5	59.54
Bra034845.1-P	Field mustard	nucleus	59.0	59.15
CDY01017	Canola	nucleus	58.0	59.03
AT3G11410.1	Thale cress	cytosol	58.75	58.9
Solyc03g096670.2.1	Tomato	nucleus	59.25	58.37
PGSC0003DMT400043146	Potato	nucleus	59.5	58.05
GSMUA_Achr5P29000_001	Banana	cytosol	53.25	55.76
GSMUA_Achr6P15180_001	Banana	cytosol	51.5	55.68
GSMUA_Achr11P...	Banana	cytosol	54.75	55.44
EER96576	Sorghum	cytosol	47.75	53.5
Zm00001d005609_P001	Maize	cytosol, mitochondrion, nucleus, plastid	46.75	53.43
TraesCS5B01G182000.1	Wheat	peroxisome	46.5	53.3
TraesCS5D01G188600.1	Wheat	peroxisome	46.25	53.01
TraesCS5A01G183600.1	Wheat	peroxisome	46.25	53.01
Zm00001d020100_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	46.5	51.96
HORVU4Hr1G060370.1	Barley	nucleus	51.5	51.5
TraesCS3A01G362200.1	Wheat	nucleus, plastid	50.0	51.15
HORVU3Hr1G085930.3	Barley	nucleus, plastid	49.75	50.64
Zm00001d028574_P001	Maize	nucleus	50.0	50.51
Os03t0268600-01	Rice	nucleus	51.0	50.49
TraesCS4B01G210100.1	Wheat	nucleus	51.25	50.49
TraesCS3D01G355900.1	Wheat	plastid	50.0	50.38
TraesCS4D01G210900.1	Wheat	nucleus	51.25	50.0
Os09t0325700-01	Rice	cytosol	44.75	50.0
Os01t0846300-01	Rice	cytosol, mitochondrion, nucleus, plastid	51.75	50.0
EER92493	Sorghum	nucleus	50.0	49.88
TraesCS4A01G094300.1	Wheat	nucleus	50.75	49.63
Zm00001d042886_P001	Maize	nucleus	50.25	49.26
EES01744	Sorghum	plastid	50.25	48.79
Zm00001d012401_P001	Maize	cytosol, mitochondrion, nucleus, plastid	49.75	48.18
TraesCS3B01G394600.3	Wheat	plastid	50.0	46.73
KXG22152	Sorghum	nucleus	48.25	41.59
VIT_16s0022g02210.t01	Wine grape	nucleus	38.25	40.91
VIT_16s0050g02680.t01	Wine grape	nucleus	28.5	38.64
VIT_02s0025g01550.t01	Wine grape	cytosol, nucleus, peroxisome	30.75	37.16
VIT_02s0025g01390.t01	Wine grape	cytosol, nucleus, plastid	36.25	36.9
VIT_11s0016g03180.t01	Wine grape	nucleus	36.25	36.62
VIT_09s0002g03530.t01	Wine grape	nucleus	33.0	35.48
VIT_09s0002g03600.t01	Wine grape	nucleus	31.25	34.63
VIT_11s0016g01780.t01	Wine grape	plastid	37.25	28.49
VIT_04s0008g01420.t01	Wine grape	cytosol	38.5	27.95
VIT_09s0002g01850.t01	Wine grape	cytosol, peroxisome, plastid	37.75	27.55
VIT_00s0179g00110.t01	Wine grape	vacuole	21.25	23.29
VIT_00s0179g00140.t01	Wine grape	vacuole	20.75	17.51

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100247958	wikigene:100247958	MapMan:18.4.24.2.1	Gene3D:3.60.40.10
ProteinID:CCB56314	ProteinID:CCB56314.1	ncoils:Coil	UniProt:F6HNU4	EMBL:FN595998	GO:GO:0003674
GO:GO:0003824	GO:GO:0004721	GO:GO:0004722	GO:GO:0005488	GO:GO:0006464	GO:GO:0006470
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0043169
GO:GO:0046872	InterPro:IPR001932	InterPro:IPR036457	EntrezGene:LOC100247958	wikigene:LOC100247958	PFAM:PF00481
InterPro:PP2C	InterPro:PP2C_BS	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	ScanProsite:PS01032	PFscan:PS51746
PANTHER:PTHR13832	PANTHER:PTHR13832:SF518	SMART:SM00332	SUPFAM:SSF81606	TIGR:TC59460	TIGR:TC64457
TIGR:TC65746	UniParc:UPI0001984867	ArrayExpress:VIT_13s0019g02200	EnsemblPlantsGene:VIT_13s0019g02200	EnsemblPlants:VIT_13s0019g02200.t01	unigene:Vvi.3095
RefSeq:XP_002282703	RefSeq:XP_002282703.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr13:+:3477305..3479695

Molecular Weight (calculated)

43744.9 Da

IEP (calculated)

5.367

GRAVY (calculated)

-0.367

Length

400 amino acids

Sequence
(BLAST)

001: MAGICCGVVG ESKTQAAIEP SSRPARRRRV DVRHLKFVAG VSVPTPEKSR KRQKLEVYDK TASEAARECE NALENCKVQE DESVELKGGV SVQVEQDQLV
101: QECPKFGMTS VRGRRRDMED AVSIHPSFWG QDAQNCTGLH YYGVYDGHGC SHVAMKCKDR MHEIAKEEIE RCGQSWEQVM ERSFSRMDKE VVEWCNGQWS
201: SNCRCELRTP QCDAVGSTAV VAIVTPEKVV VSNCGDSRAV LCRNGVAIPL SSDHKPDRPD ELLRIQAAGG RVIYWDVPRV LGVLAMSRAI GDNYLKPYVI
301: SEPEVTTWDR SPEDECLILA SDGLWDVVSN DTACGVARMC LNAQAPPSPP VSPETGAGIG AGGESSDKAC LDASMLLTKL ALARDSADNV SVVVVDLRNK

Best Arabidopsis Sequence Match ( AT3G11410.1 )
(BLAST)

001: MAGICCGVVG ETEPAAPVDS TSRASLRRRL DLLPSIKIVA DSAVAPPLEN CRKRQKRETV VLSTLPGNLD LDSNVRSENK KARSAVTNSN SVTEAESFFS
101: DVPKIGTTSV CGRRRDMEDA VSIHPSFLQR NSENHHFYGV FDGHGCSHVA EKCRERLHDI VKKEVEVMAS DEWTETMVKS FQKMDKEVSQ RECNLVVNGA
201: TRSMKNSCRC ELQSPQCDAV GSTAVVSVVT PEKIIVSNCG DSRAVLCRNG VAIPLSVDHK PDRPDELIRI QQAGGRVIYW DGARVLGVLA MSRAIGDNYL
301: KPYVIPDPEV TVTDRTDEDE CLILASDGLW DVVPNETACG VARMCLRGAG AGDDSDAAHN ACSDAALLLT KLALARQSSD NVSVVVVDLR KRRNNQASS

Arabidopsis Description

PP2CAProtein phosphatase 2C 37 [Source:UniProtKB/Swiss-Prot;Acc:P49598]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.