Factsheet for VIT_06s0004g05460.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g01270.t01
VIT_04s0008g00270.t01
VIT_05s0077g00910.t01
VIT_08s0058g00230.t01
VIT_08s0058g00470.t01
VIT_10s0003g04020.t01
VIT_11s0016g04750.t01
VIT_13s0067g01940.t01
VIT_13s0175g00110.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07430.1	VIT_10s0003g04020.t01	AT1G30270.1	17898163
AT1G07430.1	VIT_11s0016g04750.t01	AT2G26650.1	17898163
AT1G07430.1	VIT_05s0077g00910.t01	AT3G06610.1	21798944
AT5G59220.1	VIT_08s0058g00470.t01	AT2G38310.1	19407142
AT5G59220.1	VIT_13s0067g01940.t01	AT2G38310.1	19407142
AT5G59220.1	VIT_02s0012g01270.t01	AT4G17870.1	19407142
AT5G59220.1	VIT_04s0008g00270.t01	AT4G17870.1	19407142
AT5G59220.1	VIT_08s0058g00230.t01	AT4G17870.1	19407142
AT5G59220.1	VIT_13s0175g00110.t01	AT4G17870.1	19407142

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18067	Canola	cytosol	9.67	64.41
GSMUA_AchrUn_...	Banana	cytosol	44.53	61.84
VIT_13s0019g02200.t01	Wine grape	plastid	62.85	61.75
Bra018398.1-P	Field mustard	cytosol	57.25	61.48
AT2G29380.1	Thale cress	nucleus	56.23	61.05
PGSC0003DMT400077989	Potato	cytosol	63.61	60.98
CDY45436	Canola	cytosol	56.74	60.93
CDY40181	Canola	cytosol	56.74	60.93
Solyc06g076400.2.1	Tomato	nucleus	63.36	60.73
KXG35986	Sorghum	cytosol, peroxisome, plastid	31.04	60.1
CDY33008	Canola	nucleus, plastid	59.29	58.99
Bra002594.1-P	Field mustard	plastid	61.58	58.74
CDX80307	Canola	nucleus, plastid	59.03	58.59
AT5G59220.1	Thale cress	nucleus	60.31	57.38
GSMUA_Achr5P29000_001	Banana	cytosol	54.2	55.76
GSMUA_Achr11P...	Banana	cytosol	55.73	55.44
GSMUA_Achr6P15180_001	Banana	cytosol	52.16	55.41
Zm00001d005609_P001	Maize	cytosol, mitochondrion, nucleus, plastid	48.85	54.86
CDY06705	Canola	nucleus	54.2	54.62
TraesCS5D01G188600.1	Wheat	peroxisome	47.84	53.87
EER96576	Sorghum	cytosol	48.85	53.78
TraesCS5B01G182000.1	Wheat	peroxisome	47.58	53.58
Zm00001d020100_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	48.6	53.35
TraesCS5A01G183600.1	Wheat	peroxisome	47.33	53.3
HORVU4Hr1G060370.1	Barley	nucleus	52.67	51.75
Os09t0325700-01	Rice	cytosol	46.82	51.4
TraesCS4B01G210100.1	Wheat	nucleus	52.67	50.99
AT1G07430.1	Thale cress	nucleus	57.25	50.91
Os03t0268600-01	Rice	nucleus	52.16	50.74
TraesCS3A01G362200.1	Wheat	nucleus, plastid	50.38	50.64
HORVU3Hr1G085930.3	Barley	nucleus, plastid	50.38	50.38
TraesCS4D01G210900.1	Wheat	nucleus	52.42	50.24
Bra015579.1-P	Field mustard	nucleus	54.45	50.23
CDY10275	Canola	nucleus	54.96	50.23
TraesCS3D01G355900.1	Wheat	plastid	50.64	50.13
EER92493	Sorghum	nucleus	51.15	50.12
TraesCS4A01G094300.1	Wheat	nucleus	51.91	49.88
Zm00001d028574_P001	Maize	nucleus	50.13	49.75
Bra031574.1-P	Field mustard	nucleus	54.71	49.31
CDY06259	Canola	nucleus	54.71	49.31
Zm00001d042886_P001	Maize	nucleus	50.64	48.77
EES01744	Sorghum	plastid	50.89	48.54
Zm00001d012401_P001	Maize	cytosol, mitochondrion, nucleus, plastid	50.89	48.43
Os01t0846300-01	Rice	cytosol, mitochondrion, nucleus, plastid	49.87	47.34
TraesCS3B01G394600.3	Wheat	plastid	51.15	46.96
VIT_16s0022g02210.t01	Wine grape	nucleus	40.2	42.25
KXG22152	Sorghum	nucleus	48.85	41.38
Bra030455.1-P	Field mustard	cytosol	16.54	40.88
VIT_16s0050g02680.t01	Wine grape	nucleus	29.52	39.32
CDY36606	Canola	nucleus	24.43	38.4
VIT_02s0025g01390.t01	Wine grape	cytosol, nucleus, plastid	37.15	37.15
VIT_11s0016g03180.t01	Wine grape	nucleus	36.64	36.36
VIT_02s0025g01550.t01	Wine grape	cytosol, nucleus, peroxisome	30.28	35.95
VIT_09s0002g03530.t01	Wine grape	nucleus	33.33	35.22
VIT_09s0002g03600.t01	Wine grape	nucleus	32.06	34.9
VIT_04s0008g01420.t01	Wine grape	cytosol	39.44	28.13
VIT_11s0016g01780.t01	Wine grape	plastid	37.15	27.92
VIT_09s0002g01850.t01	Wine grape	cytosol, peroxisome, plastid	38.17	27.37
VIT_00s0179g00110.t01	Wine grape	vacuole	21.88	23.56
VIT_00s0179g00140.t01	Wine grape	vacuole	21.88	18.14

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100255251	wikigene:100255251	MapMan:18.4.24.2.1	Gene3D:3.60.40.10
ProteinID:CBI16058	ProteinID:CBI16058.3	UniProt:D7SK82	EMBL:FN594951	GO:GO:0003674	GO:GO:0003824
GO:GO:0004721	GO:GO:0004722	GO:GO:0005488	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0043169	GO:GO:0046872
InterPro:IPR001932	InterPro:IPR036457	EntrezGene:LOC100255251	wikigene:LOC100255251	PFAM:PF00481	InterPro:PP2C
InterPro:PP2C_BS	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	ScanProsite:PS01032	PFscan:PS51746	PANTHER:PTHR13832
PANTHER:PTHR13832:SF518	SMART:SM00331	SMART:SM00332	SUPFAM:SSF81606	TIGR:TC69525	UniParc:UPI0001BE0DD8
ArrayExpress:VIT_06s0004g05460	EnsemblPlantsGene:VIT_06s0004g05460	EnsemblPlants:VIT_06s0004g05460.t01	RefSeq:XP_002282608	RefSeq:XP_002282608.1	SEG:seg

Description

No Description!

Coordinates

chr6:+:6318873..6320828

Molecular Weight (calculated)

43242.0 Da

IEP (calculated)

6.140

GRAVY (calculated)

-0.429

Length

393 amino acids

Sequence
(BLAST)

001: MAEICCGVVS DGETSTQCEP SSRVARRRRM ELRRFKFVAG VAPSETENGQ KRRKLEAAYP YAEACSWKCA NTFENCASEV EGSCLQSEHG GSDKEHPQTS
101: FQADLQMENE YTKFGIASVC GRRRDMEDAV AVHPSFLRQH HQTTNGSHYF GVYDGHGCSH VAMNCRDRMH ELVREELENK DTCTESGWKN AMERSFSRMD
201: KEVNARNIGA SGAVCRCELQ TPECDAVGST AVVAIVTPEK IVVANCGDSR AVLCRNGKAI PLSSDHKPDR PDELQRIQSA GGRVIFWDGP RVLGVLAMSR
301: AIGDNYLKPF VSCEPEVTIT ERSAEDECLI LASDGLWDVV SNETACGVAR MCLKGKAWDK ACSDASMLLT KLALARHTAD NVSVVVVDLR KDT

Best Arabidopsis Sequence Match ( AT2G29380.1 )
(BLAST)

001: MAEICYEVVT DACPSSVYES TPAHSRRRPR FQTVMHEDWE KNCKRSKQEA LATRYSSIPR SSREDFSDQN VDVSSPRYGV SSVCGRRREM EDAVAIHPSF
101: SSPKNSEFPQ HYFGVYDGHG CSHVAARCRE RLHKLVQEEL SSDMEDEEEW KTTMERSFTR MDKEVVSWGD SVVTANCKCD LQTPACDSVG STAVVSVITP
201: DKIVVANCGD SRAVLCRNGK PVPLSTDHKP DRPDELDRIE GAGGRVIYWD CPRVLGVLAM SRAIGDNYLK PYVSCEPEVT ITDRRDDDCL ILASDGLWDV
301: VSNETACSVA RMCLRGGGRR QDNEDPAISD KACTEASVLL TKLALARNSS DNVSVVVIDL RR

Arabidopsis Description

HAI3HAI3 [Source:UniProtKB/TrEMBL;Acc:A0A178VWK9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.