Factsheet for VIT_13s0067g01940.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0004g05460.t01
VIT_09s0002g01850.t01
VIT_13s0019g02200.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38310.1	VIT_09s0002g01850.t01	AT1G72770.1	19407142
AT2G38310.1	VIT_09s0002g01850.t01	AT1G72770.1	19624469
AT2G38310.1	VIT_13s0019g02200.t01	AT3G11410.1	19407142
AT2G38310.1	VIT_06s0004g05460.t01	AT5G59220.1	19407142

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00319	Soybean	cytosol	60.38	72.32
KRH49452	Soybean	plastid	58.96	70.22
VIT_08s0058g00470.t01	Wine grape	plastid	72.64	67.84
Solyc09g015380.1.1	Tomato	plastid	62.74	66.17
TraesCS4A01G114400.1	Wheat	cytosol	55.19	65.36
Solyc10g076410.1.1	Tomato	plastid	62.26	65.02
PGSC0003DMT400075056	Potato	plastid	65.57	64.95
PGSC0003DMT400028658	Potato	nucleus	64.62	64.32
Solyc10g085310.1.1	Tomato	plastid	64.15	63.85
PGSC0003DMT400041080	Potato	mitochondrion	61.79	63.28
AT2G38310.1	Thale cress	plastid	61.32	62.8
Bra000052.1-P	Field mustard	plastid	60.85	62.32
CDY07739	Canola	plastid	60.85	62.32
CDY54415	Canola	cytosol	59.91	62.25
CDY18391	Canola	plastid	59.91	62.25
Bra017125.1-P	Field mustard	plastid	59.91	62.25
CDX91449	Canola	plastid	60.38	61.84
Bra005115.1-P	Field mustard	plastid	43.4	61.74
CDY54453	Canola	plastid	60.38	61.54
GSMUA_Achr9P04600_001	Banana	cytosol	41.51	61.54
CDY14471	Canola	plastid	59.91	61.35
TraesCS2B01G105300.1	Wheat	plastid	61.32	59.91
TraesCS2D01G087500.1	Wheat	plastid	59.91	59.35
GSMUA_Achr6P32790_001	Banana	cytosol	58.49	58.77
Zm00001d038436_P001	Maize	plastid	55.19	58.5
GSMUA_Achr9P17980_001	Banana	cytosol	41.04	58.39
GSMUA_Achr5P29490_001	Banana	plastid	44.34	58.02
GSMUA_AchrUn_...	Banana	plastid	42.92	57.59
Zm00001d047705_P001	Maize	plastid	58.96	57.34
TraesCS3B01G380300.1	Wheat	mitochondrion, plastid	55.66	57.0
TraesCS1B01G306800.1	Wheat	mitochondrion	51.89	56.7
HORVU3Hr1G039010.1	Barley	plastid	54.72	56.31
TraesCS3D01G342000.1	Wheat	plastid	54.72	56.31
TraesCS3A01G348400.1	Wheat	plastid	54.72	56.31
HORVU3Hr1G088100.1	Barley	plastid	54.72	56.31
TraesCS4B01G189800.1	Wheat	cytosol	59.43	56.25
EER92405	Sorghum	plastid	58.49	55.86
TraesCS4D01G191200.1	Wheat	cytosol	58.96	55.8
HORVU4Hr1G055220.1	Barley	cytosol	58.96	55.8
TraesCS1A01G297600.1	Wheat	mitochondrion	52.83	55.72
TraesCS1D01G293600.1	Wheat	mitochondrion, plastid	52.83	55.72
EES19683	Sorghum	plastid	56.6	55.56
Zm00001d028793_P001	Maize	cytosol, mitochondrion, plastid	57.55	55.45
GSMUA_Achr11P...	Banana	cytosol, plastid	41.04	55.06
Os03t0297600-01	Rice	cytosol	59.43	55.02
HORVU1Hr1G070420.1	Barley	mitochondrion	51.89	54.73
Os05t0473000-01	Rice	cytosol	55.66	54.38
Zm00001d043014_P001	Maize	cytosol	52.36	52.11
GSMUA_Achr8P21220_001	Banana	cytosol	41.04	51.18
VIT_04s0008g00890.t01	Wine grape	cytosol	44.34	50.81
VIT_16s0050g02620.t01	Wine grape	cytosol	42.92	49.19
VIT_02s0025g01340.t01	Wine grape	cytosol	41.04	47.03
Os01t0827800-00	Rice	plastid	54.72	45.31
GSMUA_Achr10P...	Banana	cytosol, plastid	41.98	44.95
TraesCS2A01G089400.1	Wheat	plastid	59.91	44.41
VIT_15s0046g01050.t01	Wine grape	cytosol	40.09	44.27
VIT_02s0012g01270.t01	Wine grape	cytosol	50.0	40.15
OQU87775	Sorghum	endoplasmic reticulum, extracellular	48.11	37.5
Zm00001d012475_P001	Maize	cytosol	52.36	35.58
VIT_04s0008g00270.t01	Wine grape	cytosol	26.89	19.66
VIT_08s0058g00230.t01	Wine grape	plastid	28.77	18.94
VIT_13s0175g00110.t01	Wine grape	plastid	6.13	12.26

Protein Annotations

EntrezGene:100256965	wikigene:100256965	MapMan:11.1.2.1.1.1	Gene3D:3.30.530.20	ProteinID:CCB49828	ProteinID:CCB49828.1
UniProt:F6HCA4	EMBL:FN595514	InterPro:IPR023393	EntrezGene:LOC100256965	wikigene:LOC100256965	PFAM:PF10604
PANTHER:PTHR31213	PANTHER:PTHR31213:SF3	InterPro:Polyketide_cyclase/dehydratase	SUPFAM:SSF55961	InterPro:START-like_dom_sf	UniParc:UPI00015CA85B
ArrayExpress:VIT_13s0067g01940	EnsemblPlantsGene:VIT_13s0067g01940	EnsemblPlants:VIT_13s0067g01940.t01	unigene:Vvi.22318	RefSeq:XP_002277562	RefSeq:XP_002277562.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr13:-:1064836..1065580

Molecular Weight (calculated)

22971.2 Da

IEP (calculated)

7.076

GRAVY (calculated)

-0.125

Length

212 amino acids

Sequence
(BLAST)

001: MPSSLQLHRI NNIDPTTVAV AATAAVNCHK QSRTPLRCAT PVPDAVASYH AHAVGPHQCC SMVVQTTAAA LPTVWSVVRR FDNPQAYKHF LKSCHVIFGD
101: GDIGTLREVH VVSGLPAESS TERLEILDDE RHVLSFSVVG GDHRLCNYRS VTTLHPSPTG TGTVVVESYV VDIPPGNTKE DTCVFVDTIV KCNLQSLAQM
201: SEKLTNNNRN SS

Best Arabidopsis Sequence Match ( AT2G38310.1 )
(BLAST)

001: MLAVHRPSSA VSDGDSVQIP MMIASFQKRF PSLSRDSTAA RFHTHEVGPN QCCSAVIQEI SAPISTVWSV VRRFDNPQAY KHFLKSCSVI GGDGDNVGSL
101: RQVHVVSGLP AASSTERLDI LDDERHVISF SVVGGDHRLS NYRSVTTLHP SPISGTVVVE SYVVDVPPGN TKEETCDFVD VIVRCNLQSL AKIAENTAAE
201: SKKKMSL

Arabidopsis Description

PYL4Abscisic acid receptor PYL4 [Source:UniProtKB/Swiss-Prot;Acc:O80920]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.