CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72943
CDX76528
CDX78840
CDX80307
CDX89368
CDX90405
CDX92752
CDX94382
CDX96432
CDX99476
CDY01017
CDY01532
CDY08530
CDY14318
CDY33008
CDY34065
CDY42756
CDY50002
CDY50003
CDY67227
CDY67257

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38310.1	CDX72943	AT1G72770.1	19407142
AT2G38310.1	CDX96432	AT1G72770.1	19407142
AT2G38310.1	CDX72943	AT1G72770.1	19624469
AT2G38310.1	CDX96432	AT1G72770.1	19624469
AT2G38310.1	CDY01017	AT3G11410.1	19407142
AT2G38310.1	CDY08530	AT3G11410.1	19407142
AT2G38310.1	CDY67227	AT3G11410.1	19407142
AT2G38310.1	CDY67257	AT3G11410.1	19407142
AT2G38310.1	CDX76528	AT4G18340.1	19407142
AT2G38310.1	CDX78840	AT4G18340.1	19407142
AT2G38310.1	CDX90405	AT4G18340.1	19407142
AT2G38310.1	CDX99476	AT4G18340.1	19407142
AT2G38310.1	CDY01532	AT4G18340.1	19407142
AT2G38310.1	CDY34065	AT4G18340.1	19407142
AT2G38310.1	CDX89368	AT4G26080.1	19407142
AT2G38310.1	CDX92752	AT4G26080.1	19407142
AT2G38310.1	CDX94382	AT4G26080.1	19407142
AT2G38310.1	CDY14318	AT4G26080.1	19407142
AT2G38310.1	CDY42756	AT4G26080.1	19407142
AT2G38310.1	CDY50002	AT4G26080.1	19407142
AT2G38310.1	CDY50003	AT4G26080.1	19407142
AT2G38310.1	CDX80307	AT5G59220.1	19407142
AT2G38310.1	CDY33008	AT5G59220.1	19407142

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000052.1-P	Field mustard	plastid	100.0	100.0
CDY14471	Canola	plastid	99.03	99.03
AT2G38310.1	Thale cress	plastid	92.27	92.27
CDY18391	Canola	plastid	90.82	92.16
CDY54453	Canola	plastid	92.27	91.83
CDX91449	Canola	plastid	91.79	91.79
CDY54415	Canola	cytosol	90.34	91.67
KRH00319	Soybean	cytosol	60.39	70.62
KRH49452	Soybean	plastid	58.94	68.54
TraesCS4A01G114400.1	Wheat	cytosol	54.11	62.57
Solyc09g015380.1.1	Tomato	plastid	60.39	62.19
Solyc10g085310.1.1	Tomato	plastid	62.8	61.03
VIT_13s0067g01940.t01	Wine grape	plastid	62.32	60.85
PGSC0003DMT400028658	Potato	nucleus	62.32	60.56
Solyc10g076410.1.1	Tomato	plastid	57.97	59.11
PGSC0003DMT400041080	Potato	mitochondrion	58.94	58.94
PGSC0003DMT400075056	Potato	plastid	60.87	58.88
KRH76014	Soybean	cytosol	60.87	58.33
TraesCS1B01G306800.1	Wheat	mitochondrion	54.59	58.25
VIT_08s0058g00470.t01	Wine grape	plastid	63.77	58.15
GSMUA_Achr9P04600_001	Banana	cytosol	40.1	58.04
TraesCS1D01G293600.1	Wheat	mitochondrion, plastid	56.04	57.71
TraesCS1A01G297600.1	Wheat	mitochondrion	55.56	57.21
Zm00001d038436_P001	Maize	plastid	55.07	57.0
CDX98844	Canola	cytosol	56.04	56.86
CDY04951	Canola	cytosol	54.11	56.85
GSMUA_Achr6P32790_001	Banana	cytosol	57.49	56.4
CDX70150	Canola	cytosol	55.56	56.37
HORVU1Hr1G070420.1	Barley	mitochondrion	54.59	56.22
CDX93191	Canola	cytosol	54.59	55.66
CDY52923	Canola	cytosol	55.07	55.61
TraesCS3B01G380300.1	Wheat	mitochondrion, plastid	55.56	55.56
TraesCS3A01G348400.1	Wheat	plastid	55.07	55.34
TraesCS3D01G342000.1	Wheat	plastid	55.07	55.34
HORVU3Hr1G088100.1	Barley	plastid	55.07	55.34
HORVU3Hr1G039010.1	Barley	plastid	55.07	55.34
CDX74796	Canola	cytosol, nucleus, plastid	56.52	55.19
CDY72318	Canola	cytosol	54.11	55.17
CDX80959	Canola	cytosol	53.62	54.68
CDY68675	Canola	cytosol	42.51	54.32
CDY58053	Canola	cytosol	42.51	54.32
Os05t0473000-01	Rice	cytosol	56.04	53.46
TraesCS2D01G087500.1	Wheat	plastid	55.07	53.27
EES19683	Sorghum	plastid	55.56	53.24
EER92405	Sorghum	plastid	57.0	53.15
TraesCS2B01G105300.1	Wheat	plastid	55.56	53.0
Zm00001d047705_P001	Maize	plastid	55.56	52.75
CDY18867	Canola	cytosol, mitochondrion, nucleus, plastid	53.62	52.36
CDY24911	Canola	cytosol, mitochondrion	53.62	52.11
GSMUA_AchrUn_...	Banana	plastid	39.61	51.9
CDY07608	Canola	cytosol, mitochondrion	53.14	51.89
TraesCS4B01G189800.1	Wheat	cytosol	56.04	51.79
TraesCS4D01G191200.1	Wheat	cytosol	56.04	51.79
GSMUA_Achr9P17980_001	Banana	cytosol	37.2	51.68
Zm00001d028793_P001	Maize	cytosol, mitochondrion, plastid	54.59	51.36
HORVU4Hr1G055220.1	Barley	cytosol	55.56	51.34
CDX99450	Canola	cytosol	41.06	51.2
CDY58019	Canola	cytosol	41.06	51.2
CDX78879	Canola	cytosol	41.06	51.2
Os03t0297600-01	Rice	cytosol	56.04	50.66
Zm00001d043014_P001	Maize	cytosol	50.72	49.3
CDY70860	Canola	cytosol	43.96	48.92
GSMUA_Achr5P29490_001	Banana	plastid	38.16	48.77
CDX90440	Canola	cytosol	44.93	48.69
CDY01498	Canola	cytosol	44.93	48.69
GSMUA_Achr8P21220_001	Banana	cytosol	39.61	48.24
GSMUA_Achr11P...	Banana	cytosol, plastid	36.23	47.47
CDY11503	Canola	cytosol	43.0	47.34
CDX76731	Canola	cytosol	43.0	47.34
CDY69797	Canola	cytosol	43.48	47.12
CDX90028	Canola	cytosol	42.51	46.81
CDY04688	Canola	cytosol	42.03	46.77
CDY49462	Canola	cytosol	41.55	46.74
CDY61488	Canola	cytosol	41.55	46.74
CDY15183	Canola	cytosol	42.03	46.52
CDX89219	Canola	cytosol	41.55	46.49
CDX96197	Canola	cytosol	42.03	46.28
CDY64350	Canola	cytosol	40.58	45.9
CDY38728	Canola	cytosol	40.58	45.65
CDY70517	Canola	cytosol	40.58	45.41
CDY27022	Canola	cytosol	41.06	45.21
CDY25052	Canola	cytosol	40.58	44.92
GSMUA_Achr10P...	Banana	cytosol, plastid	42.51	44.44
CDY53905	Canola	cytosol	39.61	43.85
Os01t0827800-00	Rice	plastid	54.11	43.75
CDX74368	Canola	cytosol	40.58	43.52
CDY58505	Canola	nucleus	43.96	43.33
CDX76554	Canola	cytosol	31.88	42.58
CDX91871	Canola	cytosol	39.61	42.49
CDX77691	Canola	nucleus	43.96	42.33
CDY08877	Canola	cytosol	31.4	41.94
CDX82120	Canola	plastid	40.1	40.49
CDY07165	Canola	cytosol	11.59	40.0
CDY22516	Canola	plastid	39.61	40.0
CDY48030	Canola	plastid	39.61	40.0
TraesCS2A01G089400.1	Wheat	plastid	55.07	39.86
CDY03194	Canola	nucleus	36.23	39.27
CDY68316	Canola	nucleus	36.23	39.27
OQU87775	Sorghum	endoplasmic reticulum, extracellular	48.31	36.76
Zm00001d012475_P001	Maize	cytosol	50.72	33.65

Protein Annotations

EnsemblPlants:CDY07739	EnsemblPlantsGene:GSBRNA2T00124863001	Gene3D:3.30.530.20	InterPro:IPR023393	InterPro:Polyketide_cyclase/dehydratase	InterPro:START-like_dom_sf
PANTHER:PTHR31213	PANTHER:PTHR31213:SF48	PFAM:PF10604	ProteinID:CDY07739	ProteinID:CDY07739.1	SEG:seg
SUPFAM:SSF55961	UniParc:UPI0002540093	UniProt:A0A078F3W8	MapMan:11.1.2.1.1.1	:	:

Description

BnaA03g17720DBnaA03g17720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F3W8]

Coordinates

chrLK031980:-:697998..698864

Molecular Weight (calculated)

22241.4 Da

IEP (calculated)

6.933

GRAVY (calculated)

-0.047

Length

207 amino acids

Sequence
(BLAST)

001: MLAVHRPSSA VTDGDSVQVP MMIASFQKRF PSLSRDTAAA SFHTHEVGPN QCCSAVIQEI SAPISAVWSV VRRFDNPQAY KHFLKSCNVI GGDGGNVGSL
101: RQVHVVSGLP AASSTERLDI LDDERHVISF SVVGGDHRLS NYRSVTTLHS SPICGTVVVE SYVVDVPPGN TKEETCDFVD VIVRCNLQSL AKIAESSAVE
201: GKKKTSM

Best Arabidopsis Sequence Match ( AT2G38310.1 )
(BLAST)

001: MLAVHRPSSA VSDGDSVQIP MMIASFQKRF PSLSRDSTAA RFHTHEVGPN QCCSAVIQEI SAPISTVWSV VRRFDNPQAY KHFLKSCSVI GGDGDNVGSL
101: RQVHVVSGLP AASSTERLDI LDDERHVISF SVVGGDHRLS NYRSVTTLHP SPISGTVVVE SYVVDVPPGN TKEETCDFVD VIVRCNLQSL AKIAENTAAE
201: SKKKMSL

Arabidopsis Description

PYL4Abscisic acid receptor PYL4 [Source:UniProtKB/Swiss-Prot;Acc:O80920]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.