CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72943
CDX96432
CDY35917
CDY40468

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40330.1	CDX72943	AT1G72770.1	19407142
AT2G40330.1	CDX96432	AT1G72770.1	19407142
AT2G40330.1	CDX72943	AT1G72770.1	19624469
AT2G40330.1	CDX96432	AT1G72770.1	19624469
AT2G40330.1	CDY35917	AT2G20000.1	17944809
AT2G40330.1	CDY40468	AT2G20000.1	17944809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07608	Canola	cytosol, mitochondrion	93.9	94.34
CDY52923	Canola	cytosol	84.98	88.29
CDX93191	Canola	cytosol	83.1	87.19
AT2G40330.1	Thale cress	cytosol	84.51	83.72
CDX74796	Canola	cytosol, nucleus, plastid	82.16	82.55
CDY18867	Canola	cytosol, mitochondrion, nucleus, plastid	81.69	82.08
Solyc05g052420.1.1	Tomato	cytosol	23.0	59.76
TraesCS4A01G114400.1	Wheat	cytosol	48.36	57.54
TraesCS1B01G306800.1	Wheat	mitochondrion	50.7	55.67
CDY68675	Canola	cytosol	41.78	54.94
CDY58053	Canola	cytosol	41.78	54.94
PGSC0003DMT400053119	Potato	cytosol, plastid	51.17	54.23
PGSC0003DMT400053120	Potato	cytosol, plastid	51.17	54.23
TraesCS1D01G293600.1	Wheat	mitochondrion, plastid	51.17	54.23
PGSC0003DMT400053102	Potato	cytosol, plastid	51.17	54.23
Solyc03g095780.1.1	Tomato	plastid	51.17	54.23
KRH73249	Soybean	plastid	52.58	53.85
TraesCS1A01G297600.1	Wheat	mitochondrion	50.7	53.73
CDY07739	Canola	plastid	52.11	53.62
CDY14471	Canola	plastid	52.11	53.62
CDY54415	Canola	cytosol	51.17	53.43
CDY18391	Canola	plastid	51.17	53.43
HORVU1Hr1G070420.1	Barley	mitochondrion	50.23	53.23
Zm00001d038436_P001	Maize	plastid	49.77	53.0
CDX91449	Canola	plastid	51.17	52.66
CDY54453	Canola	plastid	50.7	51.92
TraesCS3B01G380300.1	Wheat	mitochondrion, plastid	49.77	51.21
GSMUA_Achr9P04600_001	Banana	cytosol	34.27	51.05
CDX98844	Canola	cytosol	48.83	50.98
HORVU3Hr1G088100.1	Barley	plastid	49.3	50.97
TraesCS3D01G342000.1	Wheat	plastid	49.3	50.97
HORVU3Hr1G039010.1	Barley	plastid	49.3	50.97
PGSC0003DMT400069734	Potato	mitochondrion, plastid	49.77	50.96
PGSC0003DMT400061535	Potato	plastid	52.11	50.92
CDX80959	Canola	cytosol	48.36	50.74
CDY72318	Canola	cytosol	48.36	50.74
GSMUA_Achr6P32790_001	Banana	cytosol	50.23	50.71
CDX70150	Canola	cytosol	48.36	50.49
TraesCS3A01G348400.1	Wheat	plastid	48.83	50.49
Os05t0473000-01	Rice	cytosol	51.17	50.23
EES19683	Sorghum	plastid	50.7	50.0
KRH14908	Soybean	plastid	51.17	50.0
CDY04951	Canola	cytosol	46.01	49.75
TraesCS4B01G189800.1	Wheat	cytosol	52.11	49.55
TraesCS4D01G191200.1	Wheat	cytosol	52.11	49.55
HORVU4Hr1G055220.1	Barley	cytosol	51.64	49.11
GSMUA_Achr9P17980_001	Banana	cytosol	34.27	48.99
Zm00001d043014_P001	Maize	cytosol	48.83	48.83
CDX78879	Canola	cytosol	38.03	48.8
CDY58019	Canola	cytosol	38.03	48.8
CDX99450	Canola	cytosol	38.03	48.8
TraesCS2D01G087500.1	Wheat	plastid	48.83	48.6
TraesCS2B01G105300.1	Wheat	plastid	49.3	48.39
GSMUA_AchrUn_...	Banana	plastid	35.68	48.1
Os03t0297600-01	Rice	cytosol	51.17	47.6
EER92405	Sorghum	plastid	49.3	47.3
Zm00001d047705_P001	Maize	plastid	48.36	47.25
Zm00001d028793_P001	Maize	cytosol, mitochondrion, plastid	47.89	46.36
GSMUA_Achr5P29490_001	Banana	plastid	35.21	46.3
GSMUA_Achr11P...	Banana	cytosol, plastid	34.27	46.2
CDY15183	Canola	cytosol	39.91	45.45
CDX90028	Canola	cytosol	39.44	44.68
CDY53905	Canola	cytosol	38.97	44.38
CDY11503	Canola	cytosol	38.97	44.15
CDY04688	Canola	cytosol	38.5	44.09
CDY25052	Canola	cytosol	38.5	43.85
CDX76731	Canola	cytosol	38.5	43.62
GSMUA_Achr8P21220_001	Banana	cytosol	34.74	43.53
CDX89219	Canola	cytosol	37.56	43.24
KRH31193	Soybean	cytosol, golgi, plastid	52.11	43.19
CDY64350	Canola	cytosol	36.62	42.62
CDY38728	Canola	cytosol	36.62	42.39
CDY61488	Canola	cytosol	36.15	41.85
CDY49462	Canola	cytosol	36.15	41.85
Os01t0827800-00	Rice	plastid	50.23	41.8
CDY70517	Canola	cytosol	36.15	41.62
CDX96197	Canola	cytosol	36.62	41.49
Solyc06g050500.2.1	Tomato	plastid	53.05	41.09
CDX74368	Canola	cytosol	37.09	40.93
CDY27022	Canola	cytosol	35.68	40.43
CDX91871	Canola	cytosol	36.62	40.41
CDX90440	Canola	cytosol	36.15	40.31
CDY01498	Canola	cytosol	36.15	40.31
CDY70860	Canola	cytosol	34.74	39.78
CDY69797	Canola	cytosol	34.74	38.74
CDY48030	Canola	plastid	37.09	38.54
CDY22516	Canola	plastid	37.09	38.54
CDX82120	Canola	plastid	37.09	38.54
GSMUA_Achr10P...	Banana	cytosol, plastid	35.21	37.88
CDY58505	Canola	nucleus	36.15	36.67
CDY68316	Canola	nucleus	32.86	36.65
TraesCS2A01G089400.1	Wheat	plastid	48.83	36.36
CDY03194	Canola	nucleus	32.39	36.13
OQU87775	Sorghum	endoplasmic reticulum, extracellular	46.01	36.03
CDX77691	Canola	nucleus	36.15	35.81
CDY08877	Canola	cytosol	25.35	34.84
CDX76554	Canola	cytosol	25.35	34.84
CDY07165	Canola	cytosol	9.39	33.33
Zm00001d012475_P001	Maize	cytosol	47.89	32.69

Protein Annotations

EnsemblPlants:CDY24911	EnsemblPlantsGene:GSBRNA2T00028695001	Gene3D:3.30.530.20	InterPro:IPR023393	InterPro:Polyketide_cyclase/dehydratase	InterPro:START-like_dom_sf
PANTHER:PTHR31213	PANTHER:PTHR31213:SF3	PFAM:PF10604	ProteinID:CDY24911	ProteinID:CDY24911.1	SUPFAM:SSF55961
UniParc:UPI0004EF06A3	UniProt:A0A078GHR1	MapMan:11.1.2.1.1.1	:	:	:

Description

BnaC03g22610DBnaC03g22610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GHR1]

Coordinates

chrLK032166:+:103810..104451

Molecular Weight (calculated)

23713.8 Da

IEP (calculated)

6.886

GRAVY (calculated)

-0.347

Length

213 amino acids

Sequence
(BLAST)

001: MPTSIQFRRY STAVEAANAT VSTYHRHHHH KQLQKVSLTR GMADVPDHVE LSHTHVVGSS QCFSVVVQDV DAPSSAVWSI LSRFEHPQAY KHFVRSCDVA
101: VGDGREAGSV REVRVVSGLP ATFSLERLEI MDEDHHIMSF SVVGGDHRLQ NYRSVTTVHE LADDNKKTRV VESYVVDVPA GNDKEETCSF ADTIVRCNLQ
201: SLAKLAEKPS KFS

Best Arabidopsis Sequence Match ( AT2G40330.1 )
(BLAST)

001: MPTSIQFQRS STAAEAANAT VRNYPHHHQK QVQKVSLTRG MADVPEHVEL SHTHVVGPSQ CFSVVVQDVE APVSTVWSIL SRFEHPQAYK HFVKSCHVVI
101: GDGREVGSVR EVRVVSGLPA AFSLERLEIM DDDRHVISFS VVGGDHRLMN YKSVTTVHES EEDSDGKKRT RVVESYVVDV PAGNDKEETC SFADTIVRCN
201: LQSLAKLAEN TSKFS

Arabidopsis Description

PYL6Abscisic acid receptor PYL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8E3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.