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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX72943
CDX96432
CDY01017
CDY08530
CDY67227
CDY67257

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G26040.1 CDX72943 AT1G72770.1 19407142
AT2G26040.1 CDX96432 AT1G72770.1 19407142
AT2G26040.1 CDY01017 AT3G11410.1 19407142
AT2G26040.1 CDY08530 AT3G11410.1 19407142
AT2G26040.1 CDY67227 AT3G11410.1 19407142
AT2G26040.1 CDY67257 AT3G11410.1 19407142
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra007772.1-P Field mustard cytosol 100.0 100.0
CDX76731 Canola cytosol 97.34 97.34
AT2G26040.1 Thale cress cytosol 88.3 87.37
Solyc08g065410.1.1 Tomato cytosol 56.91 73.29
KRH61500 Soybean cytosol 71.28 70.9
KRH52194 Soybean cytosol 70.21 70.59
VIT_04s0008g00890.t01 Wine grape cytosol 68.09 69.19
Solyc12g095970.1.1 Tomato cytosol 69.68 68.95
PGSC0003DMT400075340 Potato cytosol 69.15 68.42
KRH05492 Soybean cytosol 67.55 67.55
PGSC0003DMT400077008 Potato cytosol 67.02 67.02
GSMUA_Achr7P09320_001 Banana cytosol 64.89 65.59
GSMUA_Achr10P... Banana cytosol 65.96 62.94
GSMUA_Achr6P00980_001 Banana cytosol 64.89 62.56
KRH15519 Soybean cytosol 69.68 62.38
Zm00001d016294_P001 Maize cytosol 62.23 62.23
EES06532 Sorghum cytosol 64.89 59.8
TraesCS3A01G154400.1 Wheat cytosol 62.23 59.39
TraesCS7D01G364600.1 Wheat cytosol 61.7 58.88
TraesCS3D01G161500.1 Wheat cytosol, nucleus, plastid 62.77 58.71
HORVU7Hr1G088140.2 Barley cytosol 61.17 58.67
TraesCS7B01G269600.1 Wheat cytosol 61.17 58.38
TraesCS7A01G358200.1 Wheat cytosol 60.64 58.16
EER88529 Sorghum cytosol 61.7 56.86
Os02t0226801-00 Rice cytosol 62.23 55.71
Os06t0562200-01 Rice cytosol 61.17 55.56
CDY70860 Canola cytosol 54.26 54.84
CDX82120 Canola plastid 59.04 54.15
CDY22516 Canola plastid 59.04 54.15
CDY48030 Canola plastid 58.51 53.66
HORVU3Hr1G030210.5 Barley plastid 32.98 53.45
CDY69797 Canola cytosol 53.72 52.88
CDX90440 Canola cytosol 53.72 52.88
CDY01498 Canola cytosol 53.72 52.88
HORVU4Hr1G060110.1 Barley mitochondrion 27.13 52.04
CDX76554 Canola cytosol 41.49 50.32
CDY08877 Canola cytosol 40.96 49.68
HORVU3Hr1G040680.1 Barley plastid 30.32 49.57
HORVU4Hr1G060100.1 Barley mitochondrion 25.53 48.98
CDY58505 Canola nucleus 53.72 48.1
CDX77691 Canola nucleus 53.72 46.98
CDY03194 Canola nucleus 46.81 46.07
CDX78879 Canola cytosol 40.43 45.78
CDY58019 Canola cytosol 40.43 45.78
CDX99450 Canola cytosol 40.43 45.78
CDY58053 Canola cytosol 38.83 45.06
CDY68675 Canola cytosol 38.83 45.06
CDY68316 Canola nucleus 45.21 44.5
CDY04951 Canola cytosol 46.28 44.16
CDY54415 Canola cytosol 47.34 43.63
CDY18391 Canola plastid 47.34 43.63
CDX91449 Canola plastid 47.34 43.0
CDY14471 Canola plastid 47.34 43.0
CDY07739 Canola plastid 47.34 43.0
CDX93191 Canola cytosol 45.74 42.36
CDY54453 Canola plastid 46.81 42.31
CDY25052 Canola cytosol 42.02 42.25
CDY70517 Canola cytosol 41.49 42.16
CDY52923 Canola cytosol 45.74 41.95
CDY61488 Canola cytosol 40.96 41.85
CDY49462 Canola cytosol 40.96 41.85
CDY38728 Canola cytosol 40.96 41.85
CDX70150 Canola cytosol 45.21 41.67
CDX98844 Canola cytosol 45.21 41.67
CDY64350 Canola cytosol 40.43 41.53
CDX96197 Canola cytosol 41.49 41.49
CDY27022 Canola cytosol 41.49 41.49
CDX89219 Canola cytosol 40.43 41.08
CDY18867 Canola cytosol, mitochondrion, nucleus, plastid 46.28 41.04
CDY53905 Canola cytosol 40.43 40.64
CDX74796 Canola cytosol, nucleus, plastid 45.74 40.57
CDY72318 Canola cytosol 43.62 40.39
CDX80959 Canola cytosol 43.62 40.39
CDY07608 Canola cytosol, mitochondrion 44.68 39.62
CDX90028 Canola cytosol 39.36 39.36
CDY15183 Canola cytosol 38.83 39.04
CDY24911 Canola cytosol, mitochondrion 44.15 38.97
CDY04688 Canola cytosol 37.77 38.17
CDX74368 Canola cytosol 38.83 37.82
CDX91871 Canola cytosol 38.83 37.82
CDY07165 Canola cytosol 10.11 31.67
HORVU3Hr1G107030.1 Barley mitochondrion 33.51 21.8
Protein Annotations
EnsemblPlants:CDY11503EnsemblPlantsGene:GSBRNA2T00049583001Gene3D:3.30.530.20InterPro:IPR023393InterPro:Polyketide_cyclase/dehydrataseInterPro:START-like_dom_sf
PANTHER:PTHR31213PANTHER:PTHR31213:SF7PFAM:PF10604ProteinID:CDY11503ProteinID:CDY11503.1SEG:seg
SUPFAM:SSF55961UniParc:UPI0002542C31UniProt:A0A078FHE3MapMan:11.1.2.1.1.1::
Description
BnaA09g40690DBnaA09g40690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FHE3]
Coordinates
chrLK032011:+:718958..719650
Molecular Weight (calculated)
20835.5 Da
IEP (calculated)
5.585
GRAVY (calculated)
-0.298
Length
188 amino acids
Sequence
(BLAST)
001: MSSSPVVKGL TDEEHKTLEP VINTYHQFEP DPTTCTSLVA QRIDAPASVV WPLIRSFDNP QRYKHFVKSC RRVSGDGGVG SVREVTVISG IPASTSTERL
101: EFLDDDHRVL SFRVVGGEHR LNNYKSVTSV NEFLNQDSGR VYTVVLESYT VDVPEGNTVE DTRMFVDTVV KLNLQKLGVI ATAAPTHD
Best Arabidopsis Sequence Match ( AT2G26040.1 )
(BLAST)
001: MSSSPAVKGL TDEEQKTLEP VIKTYHQFEP DPTTCTSLIT QRIHAPASVV WPLIRRFDNP ERYKHFVKRC RLISGDGDVG SVREVTVISG LPASTSTERL
101: EFVDDDHRVL SFRVVGGEHR LKNYKSVTSV NEFLNQDSGK VYTVVLESYT VDIPEGNTEE DTKMFVDTVV KLNLQKLGVA ATSAPMHDDE
Arabidopsis Description
PYL2Abscisic acid receptor PYL2 [Source:UniProtKB/Swiss-Prot;Acc:O80992]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.