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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX72943
CDX77691
CDX96432
CDY01017
CDY03194
CDY08530
CDY58505
CDY67227
CDY67257
CDY68316

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G46790.1 CDX72943 AT1G72770.1 19407142
AT5G46790.1 CDX96432 AT1G72770.1 19407142
AT5G46790.1 CDX72943 AT1G72770.1 21847091
AT5G46790.1 CDX96432 AT1G72770.1 21847091
AT5G46790.1 CDY01017 AT3G11410.1 19407142
AT5G46790.1 CDY08530 AT3G11410.1 19407142
AT5G46790.1 CDY67227 AT3G11410.1 19407142
AT5G46790.1 CDY67257 AT3G11410.1 19407142
AT5G46790.1 CDX77691 AT5G46790.1 21847091
AT5G46790.1 CDY03194 AT5G46790.1 21847091
AT5G46790.1 CDY58505 AT5G46790.1 21847091
AT5G46790.1 CDY68316 AT5G46790.1 21847091
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY58505 Canola nucleus 96.74 99.05
Bra024995.1-P Field mustard nucleus 96.28 98.57
CDY03194 Canola nucleus 78.14 87.96
CDY68316 Canola nucleus 78.14 87.96
CDY70860 Canola cytosol 67.91 78.49
CDY69797 Canola cytosol 68.84 77.49
CDX90440 Canola cytosol 68.37 76.96
CDY01498 Canola cytosol 67.91 76.44
AT5G46790.1 Thale cress nucleus 77.21 75.11
CDY08877 Canola cytosol 52.56 72.9
CDX76554 Canola cytosol 52.09 72.26
PGSC0003DMT400005378 Potato nucleus 65.12 65.73
Solyc06g061180.1.1 Tomato nucleus 65.12 65.73
KRH45453 Soybean cytosol 64.19 65.09
KRH75621 Soybean cytosol 62.33 62.62
GSMUA_Achr4P19170_001 Banana cytosol 55.35 61.34
GSMUA_Achr8P14780_001 Banana cytosol 56.74 59.22
VIT_02s0012g01270.t01 Wine grape cytosol 71.16 57.95
Zm00001d047037_P001 Maize cytosol 53.02 55.61
OQU92088 Sorghum cytosol 54.42 55.19
Zm00001d030045_P001 Maize cytosol 53.49 54.25
CDY11503 Canola cytosol 46.98 53.72
TraesCS1A01G191700.1 Wheat cytosol 52.56 53.55
TraesCS1D01G195300.1 Wheat cytosol 53.02 53.52
CDX76731 Canola cytosol 46.51 53.19
TraesCS1B01G206600.1 Wheat cytosol, unclear 52.56 53.05
Os10t0573400-01 Rice plasma membrane 52.09 52.83
CDY68675 Canola cytosol 37.21 49.38
CDY58053 Canola cytosol 37.21 49.38
CDY54415 Canola cytosol 43.72 46.08
CDY18391 Canola plastid 43.72 46.08
CDY25052 Canola cytosol 40.0 45.99
CDY48030 Canola plastid 43.72 45.85
CDX82120 Canola plastid 43.72 45.85
CDY22516 Canola plastid 43.72 45.85
CDX78879 Canola cytosol 35.35 45.78
CDY58019 Canola cytosol 35.35 45.78
CDX91449 Canola plastid 43.72 45.41
CDY64350 Canola cytosol 38.6 45.36
CDY54453 Canola plastid 43.72 45.19
CDX99450 Canola cytosol 34.88 45.18
CDY49462 Canola cytosol 38.6 45.11
CDY61488 Canola cytosol 38.6 45.11
CDY38728 Canola cytosol 38.14 44.57
CDY53905 Canola cytosol 38.6 44.38
CDX96197 Canola cytosol 38.6 44.15
CDY14471 Canola plastid 42.33 43.96
CDY07739 Canola plastid 42.33 43.96
CDY04951 Canola cytosol 40.0 43.65
CDY27022 Canola cytosol 37.67 43.09
CDY04688 Canola cytosol 36.74 42.47
CDY70517 Canola cytosol 36.28 42.16
CDX98844 Canola cytosol 39.53 41.67
CDX90028 Canola cytosol 36.28 41.49
CDY72318 Canola cytosol 39.07 41.38
CDX70150 Canola cytosol 39.07 41.18
CDY15183 Canola cytosol 35.81 41.18
CDX89219 Canola cytosol 35.35 41.08
CDX80959 Canola cytosol 38.6 40.89
HORVU1Hr1G050110.1 Barley plastid 52.09 40.88
CDX74368 Canola cytosol 36.28 40.41
CDX91871 Canola cytosol 35.81 39.9
CDX74796 Canola cytosol, nucleus, plastid 38.6 39.15
CDX93191 Canola cytosol 36.74 38.92
CDY52923 Canola cytosol 36.74 38.54
CDY18867 Canola cytosol, mitochondrion, nucleus, plastid 37.67 38.21
CDY07165 Canola cytosol 10.23 36.67
CDY07608 Canola cytosol, mitochondrion 35.81 36.32
CDY24911 Canola cytosol, mitochondrion 35.81 36.15
VIT_04s0008g00270.t01 Wine grape cytosol 31.16 23.1
VIT_08s0058g00230.t01 Wine grape plastid 29.77 19.88
VIT_13s0175g00110.t01 Wine grape plastid 5.58 11.32
Protein Annotations
EnsemblPlants:CDX77691EnsemblPlantsGene:GSBRNA2T00128664001Gene3D:3.30.530.20InterPro:IPR023393InterPro:Polyketide_cyclase/dehydrataseInterPro:START-like_dom_sf
PANTHER:PTHR31213PANTHER:PTHR31213:SF6PFAM:PF10604ProteinID:CDX77691ProteinID:CDX77691.1SEG:seg
SUPFAM:SSF55961UniParc:UPI0004EB6104MapMan:11.1.2.1.1.1:::
Description
BnaC07g19450D
Coordinates
chrLK031812:-:953676..955215
Molecular Weight (calculated)
24385.6 Da
IEP (calculated)
5.166
GRAVY (calculated)
-0.552
Length
215 amino acids
Sequence
(BLAST)
001: MADSEPIREG EQETHTTTTL HHQMIPSELT HDEFAELTDS ITEFHTYQLG PGRCSSLLAQ RIQSPPETVW SVVRRFDRPQ IYKHFIKRCS VEEGFEMRVG
101: CTRYVDVISG LPANTSRERL DLLDDERRVT GFSITGGEHR LRNYKSVTTV HGFERDGRIW TVVLESYVVD VPEGNTEEDT RLFADTVIKL NLQKLASITE
201: GMSRSSGDGG NPPVM
Best Arabidopsis Sequence Match ( AT5G46790.1 )
(BLAST)
001: MANSESSSSP VNEEENSQRI STLHHQTMPS DLTQDEFTQL SQSIAEFHTY QLGNGRCSSL LAQRIHAPPE TVWSVVRRFD RPQIYKHFIK SCNVSEDFEM
101: RVGCTRDVNV ISGLPANTSR ERLDLLDDDR RVTGFSITGG EHRLRNYKSV TTVHRFEKEE EEERIWTVVL ESYVVDVPEG NSEEDTRLFA DTVIRLNLQK
201: LASITEAMNR NNNNNNSSQV R
Arabidopsis Description
PYL1Abscisic acid receptor PYL1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZS8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.