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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 7
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:cytosol
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX72943
CDX96432
CDY01017
CDY08530
CDY67227
CDY67257

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G73000.1 CDX72943 AT1G72770.1 19407142
AT1G73000.1 CDX96432 AT1G72770.1 19407142
AT1G73000.1 CDY01017 AT3G11410.1 19407142
AT1G73000.1 CDY08530 AT3G11410.1 19407142
AT1G73000.1 CDY67227 AT3G11410.1 19407142
AT1G73000.1 CDY67257 AT3G11410.1 19407142
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY22516 Canola plastid 97.07 97.07
CDY48030 Canola plastid 96.59 96.59
AT1G73000.1 Thale cress cytosol, plastid 88.78 87.08
GSMUA_Achr7P09320_001 Banana cytosol 56.59 62.37
GSMUA_Achr6P00980_001 Banana cytosol 57.07 60.0
CDX76731 Canola cytosol 54.15 59.04
CDY11503 Canola cytosol 54.15 59.04
GSMUA_Achr10P... Banana cytosol 56.1 58.38
Zm00001d016294_P001 Maize cytosol 52.68 57.45
HORVU7Hr1G088140.2 Barley cytosol 52.2 54.59
TraesCS7D01G364600.1 Wheat cytosol 52.2 54.31
TraesCS7A01G358200.1 Wheat cytosol 51.71 54.08
TraesCS7B01G269600.1 Wheat cytosol 51.71 53.81
TraesCS3A01G154400.1 Wheat cytosol 51.71 53.81
TraesCS3D01G161500.1 Wheat cytosol, nucleus, plastid 52.68 53.73
EES06532 Sorghum cytosol 53.17 53.43
EER88529 Sorghum cytosol 51.71 51.96
Os06t0562200-01 Rice cytosol 51.71 51.21
CDY70860 Canola cytosol 45.85 50.54
Os02t0226801-00 Rice cytosol 51.71 50.48
HORVU4Hr1G060100.1 Barley mitochondrion 23.41 48.98
HORVU4Hr1G060110.1 Barley mitochondrion 23.41 48.98
HORVU3Hr1G030210.5 Barley plastid 27.32 48.28
CDY01498 Canola cytosol 44.88 48.17
CDX90440 Canola cytosol 44.88 48.17
CDY69797 Canola cytosol 44.88 48.17
CDY08877 Canola cytosol 35.61 47.1
CDX76554 Canola cytosol 35.12 46.45
CDY58505 Canola nucleus 45.85 44.76
HORVU3Hr1G040680.1 Barley plastid 24.88 44.35
CDX77691 Canola nucleus 45.85 43.72
CDY03194 Canola nucleus 40.49 43.46
CDY68316 Canola nucleus 40.0 42.93
CDY04951 Canola cytosol 39.51 41.12
CDX80959 Canola cytosol 40.49 40.89
CDY72318 Canola cytosol 40.49 40.89
CDX70150 Canola cytosol 40.49 40.69
CDY54415 Canola cytosol 40.49 40.69
CDY18391 Canola plastid 40.49 40.69
CDX98844 Canola cytosol 40.0 40.2
CDY07739 Canola plastid 40.49 40.1
CDX91449 Canola plastid 40.49 40.1
CDY14471 Canola plastid 40.49 40.1
CDY54453 Canola plastid 40.49 39.9
CDY38728 Canola cytosol 35.61 39.67
CDY58053 Canola cytosol 31.22 39.51
CDY68675 Canola cytosol 31.22 39.51
CDY64350 Canola cytosol 35.12 39.34
CDY49462 Canola cytosol 34.63 38.59
CDY61488 Canola cytosol 34.63 38.59
CDX93191 Canola cytosol 38.05 38.42
CDY07608 Canola cytosol, mitochondrion 39.51 38.21
CDX74796 Canola cytosol, nucleus, plastid 39.51 38.21
CDY52923 Canola cytosol 38.05 38.05
CDX78879 Canola cytosol 30.73 37.95
CDX99450 Canola cytosol 30.73 37.95
CDY58019 Canola cytosol 30.73 37.95
CDY25052 Canola cytosol 34.15 37.43
CDX96197 Canola cytosol 34.15 37.23
CDY24911 Canola cytosol, mitochondrion 38.54 37.09
CDY18867 Canola cytosol, mitochondrion, nucleus, plastid 38.05 36.79
CDY53905 Canola cytosol 33.17 36.36
CDX89219 Canola cytosol 32.68 36.22
CDY27022 Canola cytosol 33.17 36.17
CDX74368 Canola cytosol 33.66 35.75
CDY70517 Canola cytosol 32.2 35.68
CDY15183 Canola cytosol 32.2 35.29
CDX91871 Canola cytosol 33.17 35.23
CDX90028 Canola cytosol 32.2 35.11
CDY04688 Canola cytosol 30.73 33.87
CDY07165 Canola cytosol 8.78 30.0
HORVU3Hr1G107030.1 Barley mitochondrion 28.78 20.42
Protein Annotations
EnsemblPlants:CDX82120EnsemblPlantsGene:GSBRNA2T00137164001Gene3D:3.30.530.20InterPro:IPR023393InterPro:Polyketide_cyclase/dehydrataseInterPro:START-like_dom_sf
PANTHER:PTHR31213PANTHER:PTHR31213:SF7PFAM:PF10604ProteinID:CDX82120ProteinID:CDX82120.1SEG:seg
SUPFAM:SSF55961UniParc:UPI0004EDE3FCMapMan:11.1.2.1.1.1:::
Description
BnaC02g21700D
Coordinates
chrLK031827:-:844602..845219
Molecular Weight (calculated)
22915.3 Da
IEP (calculated)
9.060
GRAVY (calculated)
-0.307
Length
205 amino acids
Sequence
(BLAST)
001: MNPNLPLSHA PSSSSSTTTT PYGLTKDEFS TLDPIIRTYH TLPRSPNTCT SLIAHRVDAP ARTIWRFVRD FANPNKYKHF IKSCTIRGNG KEISVGTIRE
101: VSVVSGLPAS TSVELLEALD EEKRILSFRV LGGEHRLRNY RSVTSVNEFV VLEKDKVKRE YSVVLESYIV DIPKGNTEED TRMFVDTVVK SNLQNLAVVS
201: MASPT
Best Arabidopsis Sequence Match ( AT1G73000.1 )
(BLAST)
001: MNLAPIHDPS SSSTTTTSSS TPYGLTKDEF STLDSIIRTH HTFPRSPNTC TSLIAHRVDA PAHAIWRFVR DFANPNKYKH FIKSCTIRVN GNGIKEIKVG
101: TIREVSVVSG LPASTSVEIL EVLDEEKRIL SFRVLGGEHR LNNYRSVTSV NEFVVLEKDK KKRVYSVVLE SYIVDIPQGN TEEDTRMFVD TVVKSNLQNL
201: AVISTASPT
Arabidopsis Description
PYL3RCAR13 [Source:UniProtKB/TrEMBL;Acc:A0A178W862]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.