CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72943
CDX96432
CDY01017
CDY08530
CDY67227
CDY67257

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73000.1	CDX72943	AT1G72770.1	19407142
AT1G73000.1	CDX96432	AT1G72770.1	19407142
AT1G73000.1	CDY01017	AT3G11410.1	19407142
AT1G73000.1	CDY08530	AT3G11410.1	19407142
AT1G73000.1	CDY67227	AT3G11410.1	19407142
AT1G73000.1	CDY67257	AT3G11410.1	19407142

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48030	Canola	plastid	99.51	99.51
Bra008064.1-P	Field mustard	plastid	98.54	98.54
CDX82120	Canola	plastid	97.07	97.07
AT1G73000.1	Thale cress	cytosol, plastid	87.8	86.12
GSMUA_Achr7P09320_001	Banana	cytosol	55.61	61.29
CDX76731	Canola	cytosol	54.15	59.04
CDY11503	Canola	cytosol	54.15	59.04
GSMUA_Achr6P00980_001	Banana	cytosol	56.1	58.97
GSMUA_Achr10P...	Banana	cytosol	55.12	57.36
Zm00001d016294_P001	Maize	cytosol	52.2	56.91
TraesCS7B01G269600.1	Wheat	cytosol	52.2	54.31
TraesCS3A01G154400.1	Wheat	cytosol	52.2	54.31
TraesCS3D01G161500.1	Wheat	cytosol, nucleus, plastid	53.17	54.23
HORVU7Hr1G088140.2	Barley	cytosol	51.71	54.08
TraesCS7D01G364600.1	Wheat	cytosol	51.71	53.81
TraesCS7A01G358200.1	Wheat	cytosol	51.22	53.57
EES06532	Sorghum	cytosol	52.68	52.94
EER88529	Sorghum	cytosol	51.22	51.47
Os06t0562200-01	Rice	cytosol	51.22	50.72
CDY70860	Canola	cytosol	45.85	50.54
Os02t0226801-00	Rice	cytosol	51.22	50.0
HORVU4Hr1G060110.1	Barley	mitochondrion	23.41	48.98
HORVU4Hr1G060100.1	Barley	mitochondrion	23.41	48.98
HORVU3Hr1G030210.5	Barley	plastid	27.32	48.28
CDY01498	Canola	cytosol	44.88	48.17
CDY69797	Canola	cytosol	44.88	48.17
CDX90440	Canola	cytosol	44.88	48.17
CDY08877	Canola	cytosol	35.61	47.1
CDX76554	Canola	cytosol	35.12	46.45
CDY58505	Canola	nucleus	45.85	44.76
HORVU3Hr1G040680.1	Barley	plastid	24.88	44.35
CDX77691	Canola	nucleus	45.85	43.72
CDY03194	Canola	nucleus	40.49	43.46
CDY68316	Canola	nucleus	40.0	42.93
CDY04951	Canola	cytosol	39.51	41.12
CDX80959	Canola	cytosol	40.49	40.89
CDY72318	Canola	cytosol	40.49	40.89
CDX70150	Canola	cytosol	40.49	40.69
CDY54415	Canola	cytosol	40.49	40.69
CDY18391	Canola	plastid	40.49	40.69
CDX98844	Canola	cytosol	40.0	40.2
CDY58053	Canola	cytosol	31.71	40.12
CDY68675	Canola	cytosol	31.71	40.12
CDX91449	Canola	plastid	40.49	40.1
CDY54453	Canola	plastid	40.49	39.9
CDY38728	Canola	cytosol	35.61	39.67
CDY07739	Canola	plastid	40.0	39.61
CDY14471	Canola	plastid	40.0	39.61
CDY64350	Canola	cytosol	35.12	39.34
CDY49462	Canola	cytosol	34.63	38.59
CDY61488	Canola	cytosol	34.63	38.59
CDX93191	Canola	cytosol	38.05	38.42
CDY07608	Canola	cytosol, mitochondrion	39.51	38.21
CDX74796	Canola	cytosol, nucleus, plastid	39.51	38.21
CDY52923	Canola	cytosol	38.05	38.05
CDY58019	Canola	cytosol	30.73	37.95
CDX78879	Canola	cytosol	30.73	37.95
CDX99450	Canola	cytosol	30.73	37.95
CDY25052	Canola	cytosol	34.15	37.43
CDX96197	Canola	cytosol	34.15	37.23
CDY24911	Canola	cytosol, mitochondrion	38.54	37.09
CDY18867	Canola	cytosol, mitochondrion, nucleus, plastid	38.05	36.79
CDY53905	Canola	cytosol	33.17	36.36
CDX89219	Canola	cytosol	32.68	36.22
CDY27022	Canola	cytosol	33.17	36.17
CDX74368	Canola	cytosol	33.66	35.75
CDY70517	Canola	cytosol	32.2	35.68
CDY15183	Canola	cytosol	32.2	35.29
CDX91871	Canola	cytosol	33.17	35.23
CDX90028	Canola	cytosol	32.2	35.11
CDY04688	Canola	cytosol	30.73	33.87
CDY07165	Canola	cytosol	9.27	31.67
HORVU3Hr1G107030.1	Barley	mitochondrion	28.78	20.42

Protein Annotations

EnsemblPlants:CDY22516	EnsemblPlantsGene:GSBRNA2T00019091001	Gene3D:3.30.530.20	InterPro:IPR023393	InterPro:Polyketide_cyclase/dehydratase	InterPro:START-like_dom_sf
PANTHER:PTHR31213	PANTHER:PTHR31213:SF7	PFAM:PF10604	ProteinID:CDY22516	ProteinID:CDY22516.1	SEG:seg
SUPFAM:SSF55961	UniParc:UPI0004EDDAC7	UniProt:A0A078GAY3	MapMan:11.1.2.1.1.1	:	:

Description

BnaC03g23260DBnaC03g23260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GAY3]

Coordinates

chrLK032132:-:321666..322283

Molecular Weight (calculated)

22911.4 Da

IEP (calculated)

9.066

GRAVY (calculated)

-0.237

Length

205 amino acids

Sequence
(BLAST)

001: MNPNLPLSHA PSSSSSTTIT PYGLTKDEFS TLDPIIRTYH TLPRSPNTCT SLIAHRVDAP ARTIWRFVRD FANPNKYKHF IKSCTIRGNG KEISVGTIRE
101: VSVVSGLPAS TSIEILEALD EEKRILSFRV LGGEHRLRNY RSVTSVNEFV VLENDKVKRV YSVVLESYIV DIPKGNTEED TRMFVDTVVK SNLQNLAVVS
201: MATPT

Best Arabidopsis Sequence Match ( AT1G73000.1 )
(BLAST)

001: MNLAPIHDPS SSSTTTTSSS TPYGLTKDEF STLDSIIRTH HTFPRSPNTC TSLIAHRVDA PAHAIWRFVR DFANPNKYKH FIKSCTIRVN GNGIKEIKVG
101: TIREVSVVSG LPASTSVEIL EVLDEEKRIL SFRVLGGEHR LNNYRSVTSV NEFVVLEKDK KKRVYSVVLE SYIVDIPQGN TEEDTRMFVD TVVKSNLQNL
201: AVISTASPT

Arabidopsis Description

PYL3RCAR13 [Source:UniProtKB/TrEMBL;Acc:A0A178W862]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.