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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX72943
CDX89368
CDX92752
CDX94382
CDX96432
CDY14318
CDY38260
CDY42756
CDY50002
CDY50003
CDY54381

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G05440.1 CDX72943 AT1G72770.1 19407142
AT5G05440.1 CDX96432 AT1G72770.1 19407142
AT5G05440.1 CDX72943 AT1G72770.1 19624469
AT5G05440.1 CDX96432 AT1G72770.1 19624469
AT5G05440.1 CDX89368 AT4G26080.1 21798944
AT5G05440.1 CDX92752 AT4G26080.1 21798944
AT5G05440.1 CDX94382 AT4G26080.1 21798944
AT5G05440.1 CDY14318 AT4G26080.1 21798944
AT5G05440.1 CDY42756 AT4G26080.1 21798944
AT5G05440.1 CDY50002 AT4G26080.1 21798944
AT5G05440.1 CDY50003 AT4G26080.1 21798944
AT5G05440.1 CDY38260 AT5G57050.1 21798944
AT5G05440.1 CDY54381 AT5G57050.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY72318 Canola cytosol 97.54 97.54
CDX70150 Canola cytosol 92.12 91.67
CDX98844 Canola cytosol 92.12 91.67
AT5G05440.1 Thale cress cytosol 91.13 91.13
CDY04951 Canola cytosol 85.22 87.82
GSMUA_Achr9P04600_001 Banana cytosol 39.9 56.64
TraesCS4A01G114400.1 Wheat cytosol 48.77 55.31
TraesCS1B01G306800.1 Wheat mitochondrion 52.22 54.64
CDY18391 Canola plastid 54.68 54.41
CDY54415 Canola cytosol 54.68 54.41
CDX91449 Canola plastid 55.17 54.11
CDY07739 Canola plastid 54.68 53.62
CDY54453 Canola plastid 54.68 53.37
CDY14471 Canola plastid 54.19 53.14
TraesCS1D01G293600.1 Wheat mitochondrion, plastid 52.22 52.74
TraesCS1A01G297600.1 Wheat mitochondrion 52.22 52.74
HORVU1Hr1G070420.1 Barley mitochondrion 51.72 52.24
Zm00001d038436_P001 Maize plastid 51.23 52.0
CDY68675 Canola cytosol 41.38 51.85
CDY58053 Canola cytosol 41.38 51.85
CDX93191 Canola cytosol 51.72 51.72
GSMUA_Achr6P32790_001 Banana cytosol 53.69 51.66
CDY52923 Canola cytosol 51.72 51.22
TraesCS2D01G087500.1 Wheat plastid 53.2 50.47
GSMUA_Achr9P17980_001 Banana cytosol 36.45 49.66
TraesCS3D01G342000.1 Wheat plastid 50.25 49.51
TraesCS3A01G348400.1 Wheat plastid 50.25 49.51
HORVU3Hr1G039010.1 Barley plastid 50.25 49.51
HORVU3Hr1G088100.1 Barley plastid 50.25 49.51
GSMUA_AchrUn_... Banana plastid 38.42 49.37
TraesCS2B01G105300.1 Wheat plastid 52.71 49.31
TraesCS3B01G380300.1 Wheat mitochondrion, plastid 50.25 49.28
EES19683 Sorghum plastid 52.22 49.07
CDX74796 Canola cytosol, nucleus, plastid 51.23 49.06
CDY07608 Canola cytosol, mitochondrion 51.23 49.06
Zm00001d043014_P001 Maize cytosol 51.23 48.83
GSMUA_Achr8P21220_001 Banana cytosol 40.89 48.82
CDX78879 Canola cytosol 39.9 48.8
CDY58019 Canola cytosol 39.9 48.8
CDX99450 Canola cytosol 39.9 48.8
CDY24911 Canola cytosol, mitochondrion 50.74 48.36
GSMUA_Achr11P... Banana cytosol, plastid 37.44 48.1
Os05t0473000-01 Rice cytosol 51.23 47.93
CDY18867 Canola cytosol, mitochondrion, nucleus, plastid 49.75 47.64
Zm00001d047705_P001 Maize plastid 50.74 47.25
EER92405 Sorghum plastid 51.23 46.85
TraesCS4D01G191200.1 Wheat cytosol 50.74 45.98
TraesCS4B01G189800.1 Wheat cytosol 50.74 45.98
Zm00001d028793_P001 Maize cytosol, mitochondrion, plastid 49.75 45.91
GSMUA_Achr5P29490_001 Banana plastid 36.45 45.68
HORVU4Hr1G055220.1 Barley cytosol 50.25 45.54
Os03t0297600-01 Rice cytosol 50.74 44.98
CDY64350 Canola cytosol 39.9 44.26
CDY38728 Canola cytosol 39.9 44.02
CDX89219 Canola cytosol 39.9 43.78
CDY11503 Canola cytosol 40.39 43.62
CDX90440 Canola cytosol 40.89 43.46
CDY01498 Canola cytosol 40.89 43.46
CDY15183 Canola cytosol 39.9 43.32
CDY70517 Canola cytosol 39.41 43.24
CDX76731 Canola cytosol 39.9 43.09
CDX90028 Canola cytosol 39.9 43.09
CDY70860 Canola cytosol 39.41 43.01
CDY04688 Canola cytosol 39.41 43.01
CDY49462 Canola cytosol 38.42 42.39
CDY61488 Canola cytosol 38.42 42.39
CDX96197 Canola cytosol 38.92 42.02
CDY27022 Canola cytosol 38.92 42.02
CDY69797 Canola cytosol 39.41 41.88
CDY25052 Canola cytosol 37.93 41.18
CDY48030 Canola plastid 41.38 40.98
CDY22516 Canola plastid 40.89 40.49
CDX82120 Canola plastid 40.89 40.49
GSMUA_Achr10P... Banana cytosol, plastid 39.41 40.4
CDY53905 Canola cytosol 36.95 40.11
Os01t0827800-00 Rice plastid 50.25 39.84
CDY58505 Canola nucleus 40.89 39.52
CDX74368 Canola cytosol 37.44 39.38
CDX91871 Canola cytosol 36.95 38.86
CDX77691 Canola nucleus 40.89 38.6
CDY68316 Canola nucleus 35.96 38.22
TraesCS2A01G089400.1 Wheat plastid 53.69 38.11
CDX76554 Canola cytosol 28.57 37.42
CDY03194 Canola nucleus 34.98 37.17
CDY08877 Canola cytosol 28.08 36.77
OQU87775 Sorghum endoplasmic reticulum, extracellular 48.77 36.4
Zm00001d012475_P001 Maize cytosol 51.23 33.33
CDY07165 Canola cytosol 9.85 33.33
Protein Annotations
EnsemblPlants:CDX80959EnsemblPlantsGene:GSBRNA2T00134377001Gene3D:3.30.530.20InterPro:IPR023393InterPro:Polyketide_cyclase/dehydrataseInterPro:START-like_dom_sf
PANTHER:PTHR31213PANTHER:PTHR31213:SF3PFAM:PF10604ProteinID:CDX80959ProteinID:CDX80959.1SUPFAM:SSF55961
UniParc:UPI0004EE439FMapMan:11.1.2.1.1.1::::
Description
BnaC03g02130D
Coordinates
chrLK031823:+:994303..994914
Molecular Weight (calculated)
22678.8 Da
IEP (calculated)
6.365
GRAVY (calculated)
-0.390
Length
203 amino acids
Sequence
(BLAST)
001: MRSAVQIQHG SDAPNGFHTL QPHDQTDGLI RRVCLTRGMH VPEHVAMHHT YNVGPDQCCS SVVKTTHAPP ESVWALLRRF DNPRAYKNFI RQCRIMQGDG
101: LHAGDLREVM VVSGLPAVSS TERLEILDEE RHVISFSVVG GDHRLENYRS VTTLHASDEE GTVVVESYIV DVPPGNTEEE TVSFVDTIVR CNLQSLARST
201: NRQ
Best Arabidopsis Sequence Match ( AT5G05440.1 )
(BLAST)
001: MRSPVQLQHG SDATNGFHTL QPHDQTDGPI KRVCLTRGMH VPEHVAMHHT HDVGPDQCCS SVVQMIHAPP ESVWALVRRF DNPKVYKNFI RQCRIVQGDG
101: LHVGDLREVM VVSGLPAVSS TERLEILDEE RHVISFSVVG GDHRLKNYRS VTTLHASDDE GTVVVESYIV DVPPGNTEEE TLSFVDTIVR CNLQSLARST
201: NRQ
Arabidopsis Description
PYL5Abscisic acid receptor PYL5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLB1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.