Factsheet for GSMUA_AchrUn_randomP28440_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr1P19740_001
GSMUA_Achr3P26270_001
GSMUA_Achr5P29000_001
GSMUA_Achr6P15180_001
GSMUA_Achr7P24000_001
GSMUA_Achr8P05700_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38310.1	GSMUA_Achr3P26270_001	AT1G72770.1	19407142
AT2G38310.1	GSMUA_Achr7P24000_001	AT1G72770.1	19407142
AT2G38310.1	GSMUA_Achr8P05700_001	AT1G72770.1	19407142
AT2G38310.1	GSMUA_Achr3P26270_001	AT1G72770.1	19624469
AT2G38310.1	GSMUA_Achr7P24000_001	AT1G72770.1	19624469
AT2G38310.1	GSMUA_Achr8P05700_001	AT1G72770.1	19624469
AT2G38310.1	GSMUA_Achr11P...	AT3G11410.1	19407142
AT2G38310.1	GSMUA_Achr5P29000_001	AT3G11410.1	19407142
AT2G38310.1	GSMUA_Achr6P15180_001	AT3G11410.1	19407142
AT2G38310.1	GSMUA_AchrUn_...	AT3G11410.1	19407142
AT2G38310.1	GSMUA_Achr11P...	AT5G59220.1	19407142
AT2G38310.1	GSMUA_Achr5P29000_001	AT5G59220.1	19407142
AT2G38310.1	GSMUA_Achr6P15180_001	AT5G59220.1	19407142
AT2G38310.1	GSMUA_AchrUn_...	AT5G59220.1	19407142
AT2G40330.1	GSMUA_Achr3P26270_001	AT1G72770.1	19407142
AT2G40330.1	GSMUA_Achr7P24000_001	AT1G72770.1	19407142
AT2G40330.1	GSMUA_Achr8P05700_001	AT1G72770.1	19407142
AT2G40330.1	GSMUA_Achr3P26270_001	AT1G72770.1	19624469
AT2G40330.1	GSMUA_Achr7P24000_001	AT1G72770.1	19624469
AT2G40330.1	GSMUA_Achr8P05700_001	AT1G72770.1	19624469
AT2G40330.1	GSMUA_Achr1P19740_001	AT2G20000.1	17944809
AT5G05440.1	GSMUA_Achr3P26270_001	AT1G72770.1	19407142
AT5G05440.1	GSMUA_Achr7P24000_001	AT1G72770.1	19407142
AT5G05440.1	GSMUA_Achr8P05700_001	AT1G72770.1	19407142
AT5G05440.1	GSMUA_Achr3P26270_001	AT1G72770.1	19624469
AT5G05440.1	GSMUA_Achr7P24000_001	AT1G72770.1	19624469
AT5G05440.1	GSMUA_Achr8P05700_001	AT1G72770.1	19624469

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P17980_001	Banana	cytosol	72.78	77.18
GSMUA_Achr9P04600_001	Banana	cytosol	68.99	76.22
GSMUA_Achr8P21220_001	Banana	cytosol	77.22	71.76
GSMUA_Achr11P...	Banana	cytosol, plastid	63.29	63.29
GSMUA_Achr5P29490_001	Banana	plastid	63.92	62.35
Solyc05g052420.1.1	Tomato	cytosol	31.65	60.98
GSMUA_Achr10P...	Banana	cytosol, plastid	72.15	57.58
TraesCS4A01G114400.1	Wheat	cytosol	60.76	53.63
GSMUA_Achr6P32790_001	Banana	cytosol	68.99	51.66
KRH00319	Soybean	cytosol	55.7	49.72
Zm00001d028793_P001	Maize	cytosol, mitochondrion, plastid	67.72	48.64
TraesCS2D01G087500.1	Wheat	plastid	65.19	48.13
EER92405	Sorghum	plastid	67.09	47.75
Zm00001d047705_P001	Maize	plastid	65.82	47.71
TraesCS4B01G189800.1	Wheat	cytosol	67.09	47.32
KRH49452	Soybean	plastid	53.16	47.19
TraesCS2B01G105300.1	Wheat	plastid	64.56	47.0
HORVU4Hr1G055220.1	Barley	cytosol	66.46	46.88
TraesCS4D01G191200.1	Wheat	cytosol	66.46	46.88
Bra028758.1-P	Field mustard	cytosol	48.73	46.67
Os03t0297600-01	Rice	cytosol	66.46	45.85
KRH73249	Soybean	plastid	56.96	43.27
VIT_13s0067g01940.t01	Wine grape	plastid	57.59	42.92
GSMUA_Achr4P10630_001	Banana	mitochondrion	43.04	42.24
KRH76014	Soybean	cytosol	57.59	42.13
VIT_08s0058g00470.t01	Wine grape	plastid	59.49	41.41
PGSC0003DMT400028658	Potato	nucleus	55.06	40.85
Solyc03g095780.1.1	Tomato	plastid	51.9	40.8
Solyc10g076410.1.1	Tomato	plastid	51.9	40.39
Solyc10g085310.1.1	Tomato	plastid	54.43	40.38
PGSC0003DMT400053120	Potato	cytosol, plastid	51.27	40.3
Solyc09g015380.1.1	Tomato	plastid	51.27	40.3
PGSC0003DMT400053102	Potato	cytosol, plastid	51.27	40.3
PGSC0003DMT400053119	Potato	cytosol, plastid	51.27	40.3
CDY04951	Canola	cytosol	50.0	40.1
Bra017125.1-P	Field mustard	plastid	51.27	39.71
CDX98844	Canola	cytosol	51.27	39.71
CDY54415	Canola	cytosol	51.27	39.71
CDY18391	Canola	plastid	51.27	39.71
PGSC0003DMT400041080	Potato	mitochondrion	51.9	39.61
Bra000052.1-P	Field mustard	plastid	51.9	39.61
CDY07739	Canola	plastid	51.9	39.61
KRH14908	Soybean	plastid	54.43	39.45
AT5G05440.1	Thale cress	cytosol	50.63	39.41
CDX70150	Canola	cytosol	50.63	39.22
Bra009113.1-P	Field mustard	cytosol	50.63	39.22
AT2G38310.1	Thale cress	plastid	51.27	39.13
CDY14471	Canola	plastid	50.63	38.65
CDX91449	Canola	plastid	50.63	38.65
PGSC0003DMT400061535	Potato	plastid	53.16	38.53
CDY54453	Canola	plastid	50.63	38.46
CDX80959	Canola	cytosol	49.37	38.42
Bra005853.1-P	Field mustard	cytosol	49.37	38.42
CDX93191	Canola	cytosol	49.37	38.42
CDY72318	Canola	cytosol	49.37	38.42
PGSC0003DMT400075056	Potato	plastid	51.9	38.32
Bra017012.1-P	Field mustard	cytosol	49.37	38.05
CDY52923	Canola	cytosol	49.37	38.05
CDX74796	Canola	cytosol, nucleus, plastid	50.0	37.26
PGSC0003DMT400069734	Potato	mitochondrion, plastid	48.73	37.02
AT2G40330.1	Thale cress	cytosol	50.0	36.74
Bra000184.1-P	Field mustard	cytosol, mitochondrion	48.73	36.32
Bra004967.1-P	Field mustard	mitochondrion	48.73	36.32
CDY07608	Canola	cytosol, mitochondrion	48.73	36.32
TraesCS2A01G089400.1	Wheat	plastid	65.19	36.01
CDY24911	Canola	cytosol, mitochondrion	48.1	35.68
GSMUA_Achr10P...	Banana	cytosol	41.77	35.48
CDY18867	Canola	cytosol, mitochondrion, nucleus, plastid	47.47	35.38
GSMUA_AchrUn_...	Banana	cytosol	41.14	34.95
GSMUA_Achr4P19170_001	Banana	cytosol	42.41	34.54
GSMUA_Achr2P19970_001	Banana	cytosol	40.51	34.41
GSMUA_Achr10P...	Banana	cytosol	40.51	34.41
GSMUA_Achr7P09320_001	Banana	cytosol	40.51	34.41
GSMUA_Achr6P00980_001	Banana	cytosol	41.77	33.85
GSMUA_Achr8P14780_001	Banana	cytosol	42.41	32.52
Bra005115.1-P	Field mustard	plastid	30.38	32.21
GSMUA_Achr4P08490_001	Banana	cytosol	40.51	32.16
GSMUA_Achr10P...	Banana	cytosol	39.87	31.98
KRH31193	Soybean	cytosol, golgi, plastid	51.9	31.91
Solyc06g050500.2.1	Tomato	plastid	55.06	31.64
GSMUA_Achr4P15170_001	Banana	cytosol	50.0	31.6
GSMUA_Achr3P03480_001	Banana	cytosol	39.87	30.58
GSMUA_Achr8P19910_001	Banana	mitochondrion	39.87	30.14
GSMUA_Achr4P15670_001	Banana	cytosol	34.81	29.41
GSMUA_Achr2P15420_001	Banana	cytosol, mitochondrion, nucleus, plastid	38.61	26.75

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP28440_001	EnsemblPlants:GSMUA_AchrUn_randomT28440_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG28440_001	Gene3D:3.30.530.20	InterPro:IPR023393	InterPro:Polyketide_cyclase/dehydratase
InterPro:START-like_dom_sf	PANTHER:PTHR31213	PANTHER:PTHR31213:SF3	PFAM:PF10604	SEG:seg	SUPFAM:SSF55961
UniParc:UPI000296BD99	UniProt:M0UD52	MapMan:11.1.2.1.1.1	:	:	:

Description

Putative uncharacterized protein c17 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG28440_001]

Coordinates

chrchrUn_random:+:138030173..138030784

Molecular Weight (calculated)

16760.9 Da

IEP (calculated)

7.326

GRAVY (calculated)

-0.111

Length

158 amino acids

Sequence
(BLAST)

001: MPSIPPPKPS TQFQMVTAAE RCTAHALPEA VARHHEHAAG PKQCCSAVVQ AVAAPVGAVW SVRLEVLDDE HHVLSFRVVG GDHRLANYRS VTTLHPAAGG
101: GGGTEVVESY VVDVPPGNTR EDTRVFVDTI VKCNLQSLAR TAEALHRRHV AAAPTATP

Best Arabidopsis Sequence Match ( AT5G05440.1 )
(BLAST)

001: MRSPVQLQHG SDATNGFHTL QPHDQTDGPI KRVCLTRGMH VPEHVAMHHT HDVGPDQCCS SVVQMIHAPP ESVWALVRRF DNPKVYKNFI RQCRIVQGDG
101: LHVGDLREVM VVSGLPAVSS TERLEILDEE RHVISFSVVG GDHRLKNYRS VTTLHASDDE GTVVVESYIV DVPPGNTEEE TLSFVDTIVR CNLQSLARST
201: NRQ

Arabidopsis Description

PYL5Abscisic acid receptor PYL5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLB1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.