CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89350
KRH02667
KRH11184
KRH12454
KRH19237
KRH21069
KRH37441
KRH50394
KRH73525

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38310.1	KRH73525	AT3G11410.1	19407142
AT2G38310.1	KRG89350	AT4G18340.1	19407142
AT2G38310.1	KRH11184	AT4G18340.1	19407142
AT2G38310.1	KRH21069	AT4G18340.1	19407142
AT2G38310.1	KRH50394	AT4G18340.1	19407142
AT2G38310.1	KRH02667	AT4G26080.1	19407142
AT2G38310.1	KRH12454	AT4G26080.1	19407142
AT2G38310.1	KRH19237	AT4G26080.1	19407142
AT2G38310.1	KRH37441	AT4G26080.1	19407142

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00319	Soybean	cytosol	63.89	77.97
KRH49452	Soybean	plastid	61.11	74.16
PGSC0003DMT400028658	Potato	nucleus	68.06	69.01
Solyc09g015380.1.1	Tomato	plastid	63.89	68.66
Solyc10g085310.1.1	Tomato	plastid	66.67	67.61
PGSC0003DMT400075056	Potato	plastid	66.2	66.82
PGSC0003DMT400041080	Potato	mitochondrion	63.43	66.18
Solyc10g076410.1.1	Tomato	plastid	61.11	65.02
TraesCS4A01G114400.1	Wheat	cytosol	53.7	64.8
VIT_08s0058g00470.t01	Wine grape	plastid	67.59	64.32
AT2G38310.1	Thale cress	plastid	61.11	63.77
CDY18391	Canola	plastid	59.26	62.75
CDY54415	Canola	cytosol	59.26	62.75
Bra017125.1-P	Field mustard	plastid	59.26	62.75
Bra005115.1-P	Field mustard	plastid	43.06	62.42
CDX91449	Canola	plastid	59.72	62.32
GSMUA_Achr9P04600_001	Banana	cytosol	41.2	62.24
CDY54453	Canola	plastid	59.72	62.02
KRH73249	Soybean	plastid	59.72	62.02
Bra000052.1-P	Field mustard	plastid	58.33	60.87
CDY07739	Canola	plastid	58.33	60.87
CDY14471	Canola	plastid	57.87	60.39
GSMUA_Achr9P17980_001	Banana	cytosol	41.2	59.73
GSMUA_Achr6P32790_001	Banana	cytosol	58.33	59.72
GSMUA_Achr11P...	Banana	cytosol, plastid	43.52	59.49
GSMUA_Achr5P29490_001	Banana	plastid	44.44	59.26
TraesCS1B01G306800.1	Wheat	mitochondrion	52.78	58.76
KRH14908	Soybean	plastid	58.8	58.26
TraesCS1A01G297600.1	Wheat	mitochondrion	54.17	58.21
Zm00001d038436_P001	Maize	plastid	53.7	58.0
HORVU1Hr1G070420.1	Barley	mitochondrion	53.7	57.71
GSMUA_AchrUn_...	Banana	plastid	42.13	57.59
TraesCS3B01G380300.1	Wheat	mitochondrion, plastid	55.09	57.49
TraesCS2D01G087500.1	Wheat	plastid	56.94	57.48
TraesCS3D01G342000.1	Wheat	plastid	54.63	57.28
TraesCS3A01G348400.1	Wheat	plastid	54.63	57.28
HORVU3Hr1G088100.1	Barley	plastid	54.63	57.28
HORVU3Hr1G039010.1	Barley	plastid	54.63	57.28
TraesCS1D01G293600.1	Wheat	mitochondrion, plastid	53.24	57.21
TraesCS2B01G105300.1	Wheat	plastid	57.41	57.14
Zm00001d028793_P001	Maize	cytosol, mitochondrion, plastid	56.48	55.45
TraesCS4B01G189800.1	Wheat	cytosol	57.41	55.36
HORVU4Hr1G055220.1	Barley	cytosol	57.41	55.36
EES19683	Sorghum	plastid	55.09	55.09
Zm00001d047705_P001	Maize	plastid	55.56	55.05
TraesCS4D01G191200.1	Wheat	cytosol	56.94	54.91
Os03t0297600-01	Rice	cytosol	57.87	54.59
EER92405	Sorghum	plastid	56.02	54.5
Os05t0473000-01	Rice	cytosol	54.63	54.38
GSMUA_Achr8P21220_001	Banana	cytosol	42.59	54.12
Zm00001d043014_P001	Maize	cytosol	52.78	53.52
KRH45453	Soybean	cytosol	49.07	50.0
KRH31193	Soybean	cytosol, golgi, plastid	59.26	49.81
KRH61500	Soybean	cytosol	42.59	48.68
KRH52194	Soybean	cytosol	42.13	48.66
KRH75621	Soybean	cytosol	48.15	48.6
KRH05492	Soybean	cytosol	42.13	48.4
KRH21267	Soybean	cytosol	40.28	47.03
KRH11022	Soybean	cytosol	40.28	47.03
GSMUA_Achr10P...	Banana	cytosol, plastid	43.06	46.97
KRH47929	Soybean	cytosol	39.81	46.49
Os01t0827800-00	Rice	plastid	54.63	46.09
KRH65286	Soybean	cytosol	18.98	45.05
KRH53449	Soybean	cytosol	39.81	45.03
KRH18155	Soybean	cytosol	39.81	45.03
KRH74424	Soybean	cytosol	45.83	44.8
KRH65845	Soybean	cytosol	39.81	44.56
TraesCS2A01G089400.1	Wheat	plastid	57.41	43.36
KRH15519	Soybean	cytosol	42.13	43.33
KRH16733	Soybean	cytosol	20.83	42.86
OQU87775	Sorghum	endoplasmic reticulum, extracellular	50.93	40.44
KRH06494	Soybean	cytosol, extracellular, vacuole	34.72	39.27
KRH39536	Soybean	plastid	45.83	37.22
Zm00001d012475_P001	Maize	cytosol	53.24	36.86

Protein Annotations

EMBL:ACUP02000549	EnsemblPlants:KRH76014	EnsemblPlantsGene:GLYMA_01G124700	EntrezGene:100788199	Gene3D:3.30.530.20	InterPro:IPR023393
InterPro:Polyketide_cyclase/dehydratase	InterPro:START-like_dom_sf	PANTHER:PTHR31213	PANTHER:PTHR31213:SF3	PFAM:PF10604	ProteinID:KRH76014
ProteinID:KRH76014.1	SEG:seg	SUPFAM:SSF55961	UniParc:UPI0002336D91	UniProt:I1J7H4	MapMan:11.1.2.1.1.1

Description

hypothetical protein

Coordinates

chr1:+:43007954..43009800

Molecular Weight (calculated)

23187.3 Da

IEP (calculated)

7.031

GRAVY (calculated)

-0.163

Length

216 amino acids

Sequence
(BLAST)

001: MLQNSSMSSL LLHRINGGGG ATTATNCHDT VFMTVPDGVA RYHTHAVAPN QCCSSVAQEI GASVATVWSV LRRFDNPQAY KHFVKSCHVI GGDGDVGTLR
101: EVHVISGLPA ARSTERLEIL DDERHVISFS VVGGDHRLAN YRSVTTLHPT ASSASGGCSG TVVVESYVVD VPPGNTREDT RVFVDTIVKC NLQSLAQTAE
201: NLTLRKNNNN DYKCCS

Best Arabidopsis Sequence Match ( AT2G38310.1 )
(BLAST)

001: MLAVHRPSSA VSDGDSVQIP MMIASFQKRF PSLSRDSTAA RFHTHEVGPN QCCSAVIQEI SAPISTVWSV VRRFDNPQAY KHFLKSCSVI GGDGDNVGSL
101: RQVHVVSGLP AASSTERLDI LDDERHVISF SVVGGDHRLS NYRSVTTLHP SPISGTVVVE SYVVDVPPGN TKEETCDFVD VIVRCNLQSL AKIAENTAAE
201: SKKKMSL

Arabidopsis Description

PYL4Abscisic acid receptor PYL4 [Source:UniProtKB/Swiss-Prot;Acc:O80920]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.