Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cytosol:
29344831
nucleus: 29344831 |
gfp PMID:
29344831
doi
Maize Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China., Maize Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China. aumdyms@sicau.edu.cn., Shanghai Center for Plant Stress Biology, and CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, 200032, China., Shanghai Center for Plant Stress Biology, and CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, 200032, China. zhaoyang@sibs.ac.cn.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d043014_P001 | Maize | cytosol | 59.29 | 86.85 |
| OQU87775 | Sorghum | endoplasmic reticulum, extracellular | 66.67 | 76.47 |
| TraesCS1B01G306800.1 | Wheat | mitochondrion | 43.59 | 70.1 |
| Zm00001d038436_P001 | Maize | plastid | 44.55 | 69.5 |
| TraesCS3D01G342000.1 | Wheat | plastid | 45.83 | 69.42 |
| TraesCS1D01G293600.1 | Wheat | mitochondrion, plastid | 44.55 | 69.15 |
| TraesCS1A01G297600.1 | Wheat | mitochondrion | 44.55 | 69.15 |
| HORVU1Hr1G070420.1 | Barley | mitochondrion | 44.55 | 69.15 |
| TraesCS3A01G348400.1 | Wheat | plastid | 45.51 | 68.93 |
| HORVU3Hr1G088100.1 | Barley | plastid | 45.51 | 68.93 |
| HORVU3Hr1G039010.1 | Barley | plastid | 45.51 | 68.93 |
| TraesCS3B01G380300.1 | Wheat | mitochondrion, plastid | 45.19 | 68.12 |
| Os05t0473000-01 | Rice | cytosol | 44.55 | 64.06 |
| Solyc05g052420.1.1 | Tomato | cytosol | 16.35 | 62.2 |
| Bra028758.1-P | Field mustard | cytosol | 32.37 | 61.21 |
| KRH00319 | Soybean | cytosol | 33.65 | 59.32 |
| KRH49452 | Soybean | plastid | 32.69 | 57.3 |
| Zm00001d047705_P001 | Maize | plastid | 38.78 | 55.5 |
| Os01t0827800-00 | Rice | plastid | 45.51 | 55.47 |
| PGSC0003DMT400053119 | Potato | cytosol, plastid | 35.58 | 55.22 |
| PGSC0003DMT400053102 | Potato | cytosol, plastid | 35.58 | 55.22 |
| PGSC0003DMT400053120 | Potato | cytosol, plastid | 35.58 | 55.22 |
| GSMUA_Achr5P29490_001 | Banana | plastid | 28.53 | 54.94 |
| Solyc03g095780.1.1 | Tomato | plastid | 35.26 | 54.73 |
| Zm00001d028793_P001 | Maize | cytosol, mitochondrion, plastid | 38.46 | 54.55 |
| CDX98844 | Canola | cytosol | 35.58 | 54.41 |
| CDY04951 | Canola | cytosol | 34.29 | 54.31 |
| AT5G05440.1 | Thale cress | cytosol | 35.26 | 54.19 |
| Bra009113.1-P | Field mustard | cytosol | 35.26 | 53.92 |
| CDX70150 | Canola | cytosol | 35.26 | 53.92 |
| KRH73249 | Soybean | plastid | 35.9 | 53.85 |
| GSMUA_Achr11P... | Banana | cytosol, plastid | 27.24 | 53.8 |
| KRH76014 | Soybean | cytosol | 36.86 | 53.24 |
| PGSC0003DMT400028658 | Potato | nucleus | 35.9 | 52.58 |
| Solyc10g085310.1.1 | Tomato | plastid | 35.9 | 52.58 |
| PGSC0003DMT400069734 | Potato | mitochondrion, plastid | 34.94 | 52.4 |
| VIT_13s0067g01940.t01 | Wine grape | plastid | 35.58 | 52.36 |
| PGSC0003DMT400061535 | Potato | plastid | 36.54 | 52.29 |
| CDX93191 | Canola | cytosol | 33.97 | 52.22 |
| CDY54415 | Canola | cytosol | 33.97 | 51.96 |
| Bra017125.1-P | Field mustard | plastid | 33.97 | 51.96 |
| CDY18391 | Canola | plastid | 33.97 | 51.96 |
| Solyc10g076410.1.1 | Tomato | plastid | 33.65 | 51.72 |
| Bra005853.1-P | Field mustard | cytosol | 33.65 | 51.72 |
| CDY72318 | Canola | cytosol | 33.65 | 51.72 |
| Bra017012.1-P | Field mustard | cytosol | 33.97 | 51.71 |
| CDY52923 | Canola | cytosol | 33.97 | 51.71 |
| CDX91449 | Canola | plastid | 34.29 | 51.69 |
| Solyc09g015380.1.1 | Tomato | plastid | 33.01 | 51.24 |
| CDX80959 | Canola | cytosol | 33.33 | 51.23 |
| PGSC0003DMT400041080 | Potato | mitochondrion | 33.65 | 50.72 |
| Bra000052.1-P | Field mustard | plastid | 33.65 | 50.72 |
| AT2G38310.1 | Thale cress | plastid | 33.65 | 50.72 |
| CDY07739 | Canola | plastid | 33.65 | 50.72 |
| CDX74796 | Canola | cytosol, nucleus, plastid | 34.29 | 50.47 |
| KRH14908 | Soybean | plastid | 35.26 | 50.46 |
| Bra005115.1-P | Field mustard | plastid | 24.04 | 50.34 |
| CDY14471 | Canola | plastid | 33.33 | 50.24 |
| Bra004967.1-P | Field mustard | mitochondrion | 33.97 | 50.0 |
| CDY54453 | Canola | plastid | 33.33 | 50.0 |
| VIT_08s0058g00470.t01 | Wine grape | plastid | 36.22 | 49.78 |
| AT2G40330.1 | Thale cress | cytosol | 34.29 | 49.77 |
| CDY18867 | Canola | cytosol, mitochondrion, nucleus, plastid | 33.65 | 49.53 |
| PGSC0003DMT400075056 | Potato | plastid | 33.33 | 48.6 |
| Zm00001d016294_P001 | Maize | cytosol | 29.17 | 48.4 |
| CDY24911 | Canola | cytosol, mitochondrion | 32.69 | 47.89 |
| CDY07608 | Canola | cytosol, mitochondrion | 32.37 | 47.64 |
| Bra000184.1-P | Field mustard | cytosol, mitochondrion | 32.37 | 47.64 |
| KRH31193 | Soybean | cytosol, golgi, plastid | 37.18 | 45.14 |
| Zm00001d002533_P001 | Maize | cytosol | 17.31 | 42.86 |
| Zm00001d010445_P001 | Maize | cytosol | 26.92 | 42.64 |
| Solyc06g050500.2.1 | Tomato | plastid | 37.5 | 42.55 |
| Zm00001d037719_P001 | Maize | cytosol | 26.6 | 42.13 |
| Zm00001d047037_P001 | Maize | cytosol | 27.56 | 41.95 |
| Zm00001d030045_P001 | Maize | cytosol | 28.21 | 41.51 |
| Zm00001d053396_P001 | Maize | cytosol | 28.21 | 40.55 |
| Zm00001d016105_P001 | Maize | cytosol | 27.24 | 40.09 |
Protein Annotations
| EMBL:KJ855103 | EnsemblPlants:Zm00001d012475_P001 | EnsemblPlants:Zm00001d012475_T001 | EnsemblPlantsGene:Zm00001d012475 | Gene3D:3.30.530.20 | InterPro:IPR023393 |
| InterPro:Polyketide_cyclase/dehydratase | InterPro:START-like_dom_sf | PANTHER:PTHR31213 | PANTHER:PTHR31213:SF21 | PFAM:PF10604 | ProteinID:AQK99612.1 |
| SEG:seg | SUPFAM:SSF55961 | UniParc:UPI00022131DF | UniProt:K7VNS9 | MapMan:11.1.2.1.1.1 | : |
Description
GRMZM2G169695AT-rich element binding factor 3
Coordinates
chr8:-:175178145..175184442
Molecular Weight (calculated)
34181.8 Da
IEP (calculated)
7.147
GRAVY (calculated)
-0.119
Length
312 amino acids
Sequence
(BLAST)
(BLAST)
001: MSIPTSHIPI HIHPPTPTRP PTVFLVFTFL TQFTHPLTIS PIDHCCHIPN PLPVVFGVFP AAAAAVAVVH HTVPLAVISM RERNSSIDQE HQRGSSSRST
101: MPFAASRTSQ QQHSRVATNG RAVAVCAGHA GVPDEVARHH EHAVAAGQCC AAMVQSIAAP VDAVWSLVRR FDQPQRYKRF IRSCHLVDGD GAEVGSVREL
201: LLVSGLPAES SRERLEIRDD ERRVISFRVL GGDHRLANYR SVTTVHEAAP SQDGRPLTMV VESYVVDVPP GNTVEETRIF VDTIVRCNLQ SLEGTVIRQL
301: EIAAMPHDDN QN
101: MPFAASRTSQ QQHSRVATNG RAVAVCAGHA GVPDEVARHH EHAVAAGQCC AAMVQSIAAP VDAVWSLVRR FDQPQRYKRF IRSCHLVDGD GAEVGSVREL
201: LLVSGLPAES SRERLEIRDD ERRVISFRVL GGDHRLANYR SVTTVHEAAP SQDGRPLTMV VESYVVDVPP GNTVEETRIF VDTIVRCNLQ SLEGTVIRQL
301: EIAAMPHDDN QN
001: MPTSIQFQRS STAAEAANAT VRNYPHHHQK QVQKVSLTRG MADVPEHVEL SHTHVVGPSQ CFSVVVQDVE APVSTVWSIL SRFEHPQAYK HFVKSCHVVI
101: GDGREVGSVR EVRVVSGLPA AFSLERLEIM DDDRHVISFS VVGGDHRLMN YKSVTTVHES EEDSDGKKRT RVVESYVVDV PAGNDKEETC SFADTIVRCN
201: LQSLAKLAEN TSKFS
101: GDGREVGSVR EVRVVSGLPA AFSLERLEIM DDDRHVISFS VVGGDHRLMN YKSVTTVHES EEDSDGKKRT RVVESYVVDV PAGNDKEETC SFADTIVRCN
201: LQSLAKLAEN TSKFS
Arabidopsis Description
PYL6Abscisic acid receptor PYL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8E3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.