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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra002766.1-P
Bra010441.1-P
Bra013945.1-P
Bra016034.1-P
Bra019121.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G05440.1 Bra016034.1-P AT1G72770.1 19407142
AT5G05440.1 Bra016034.1-P AT1G72770.1 19624469
AT5G05440.1 Bra010441.1-P AT4G26080.1 21798944
AT5G05440.1 Bra013945.1-P AT4G26080.1 21798944
AT5G05440.1 Bra019121.1-P AT4G26080.1 21798944
AT5G05440.1 Bra002766.1-P AT5G57050.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY72318 Canola cytosol 99.01 99.01
Bra009113.1-P Field mustard cytosol 91.63 91.18
AT5G05440.1 Thale cress cytosol 90.64 90.64
Bra028758.1-P Field mustard cytosol 72.91 89.7
GSMUA_Achr9P04600_001 Banana cytosol 39.41 55.94
TraesCS4A01G114400.1 Wheat cytosol 48.77 55.31
Bra017125.1-P Field mustard plastid 55.17 54.9
Bra005115.1-P Field mustard plastid 39.9 54.36
TraesCS1B01G306800.1 Wheat mitochondrion 51.72 54.12
Bra000052.1-P Field mustard plastid 55.17 54.11
Zm00001d038436_P001 Maize plastid 51.72 52.5
TraesCS1D01G293600.1 Wheat mitochondrion, plastid 51.72 52.24
TraesCS1A01G297600.1 Wheat mitochondrion 51.72 52.24
HORVU1Hr1G070420.1 Barley mitochondrion 51.23 51.74
GSMUA_Achr6P32790_001 Banana cytosol 53.69 51.66
Bra017012.1-P Field mustard cytosol 51.72 51.22
HORVU3Hr1G088100.1 Barley plastid 50.74 50.0
HORVU3Hr1G039010.1 Barley plastid 50.74 50.0
TraesCS3A01G348400.1 Wheat plastid 50.74 50.0
TraesCS3D01G342000.1 Wheat plastid 50.74 50.0
TraesCS3B01G380300.1 Wheat mitochondrion, plastid 50.74 49.76
EES19683 Sorghum plastid 52.71 49.54
Bra025048.1-P Field mustard cytosol 41.38 49.41
GSMUA_AchrUn_... Banana plastid 38.42 49.37
TraesCS2D01G087500.1 Wheat plastid 51.72 49.07
Bra000184.1-P Field mustard cytosol, mitochondrion 51.23 49.06
GSMUA_Achr9P17980_001 Banana cytosol 35.96 48.99
Zm00001d043014_P001 Maize cytosol 51.23 48.83
Bra013334.1-P Field mustard cytosol 39.9 48.8
Bra004967.1-P Field mustard mitochondrion 50.74 48.58
Os05t0473000-01 Rice cytosol 51.72 48.39
TraesCS2B01G105300.1 Wheat plastid 51.72 48.39
GSMUA_Achr8P21220_001 Banana cytosol 39.9 47.65
GSMUA_Achr11P... Banana cytosol, plastid 36.95 47.47
Zm00001d047705_P001 Maize plastid 50.74 47.25
EER92405 Sorghum plastid 51.23 46.85
TraesCS4D01G191200.1 Wheat cytosol 50.74 45.98
TraesCS4B01G189800.1 Wheat cytosol 50.74 45.98
Zm00001d028793_P001 Maize cytosol, mitochondrion, plastid 49.75 45.91
GSMUA_Achr5P29490_001 Banana plastid 36.45 45.68
HORVU4Hr1G055220.1 Barley cytosol 50.25 45.54
Bra029093.1-P Field mustard cytosol 40.89 45.11
Os03t0297600-01 Rice cytosol 50.74 44.98
Bra026299.1-P Field mustard cytosol 40.39 44.57
Bra012635.1-P Field mustard cytosol 41.87 44.5
Bra007772.1-P Field mustard cytosol 40.39 43.62
Bra033267.1-P Field mustard cytosol 39.9 43.55
Bra003077.1-P Field mustard cytosol 38.92 42.93
Bra022634.1-P Field mustard cytosol 39.41 42.55
Bra013262.1-P Field mustard cytosol 39.9 42.41
Bra003463.1-P Field mustard cytosol 37.93 41.18
Bra008064.1-P Field mustard plastid 40.89 40.49
Bra024995.1-P Field mustard nucleus 41.87 40.48
GSMUA_Achr10P... Banana cytosol, plastid 39.41 40.4
Os01t0827800-00 Rice plastid 50.74 40.23
Bra000938.1-P Field mustard cytosol 37.93 39.9
Bra017526.1-P Field mustard nucleus 35.47 39.34
Bra021032.1-P Field mustard cytosol 29.56 38.22
TraesCS2A01G089400.1 Wheat plastid 52.22 37.06
OQU87775 Sorghum endoplasmic reticulum, extracellular 49.26 36.76
Zm00001d012475_P001 Maize cytosol 51.72 33.65
Protein Annotations
EnsemblPlants:Bra005853.1EnsemblPlants:Bra005853.1-PEnsemblPlantsGene:Bra005853Gene3D:3.30.530.20InterPro:IPR023393InterPro:Polyketide_cyclase/dehydratase
InterPro:START-like_dom_sfPANTHER:PTHR31213PANTHER:PTHR31213:SF3PFAM:PF10604SUPFAM:SSF55961UniParc:UPI000253FC6E
UniProt:M4CNR5MapMan:11.1.2.1.1.1::::
Description
AT5G05440 (E=1e-107) | unknown protein
Coordinates
chrA03:+:930207..930818
Molecular Weight (calculated)
22728.8 Da
IEP (calculated)
6.111
GRAVY (calculated)
-0.379
Length
203 amino acids
Sequence
(BLAST)
001: MRSAVQIQQS SDAPNGFHTL QPHDQTDGLI RRVCLTRGMH VPEHVAMHHT YDVGPDQCCS SVVKTIHAPP ESVWSLLRRF DNPRAYKNFI RQCRIMQGDG
101: LHAGDLREVM VVSGLPAVSS TERLEILDEE RHVISFSVVG GDHRLENYRS VTTLHASDDE GTVVVESYIV DIPPGNTEEE TVSFVDTIVR CNLQSLARST
201: NRQ
Best Arabidopsis Sequence Match ( AT5G05440.1 )
(BLAST)
001: MRSPVQLQHG SDATNGFHTL QPHDQTDGPI KRVCLTRGMH VPEHVAMHHT HDVGPDQCCS SVVQMIHAPP ESVWALVRRF DNPKVYKNFI RQCRIVQGDG
101: LHVGDLREVM VVSGLPAVSS TERLEILDEE RHVISFSVVG GDHRLKNYRS VTTLHASDDE GTVVVESYIV DVPPGNTEEE TLSFVDTIVR CNLQSLARST
201: NRQ
Arabidopsis Description
PYL5Abscisic acid receptor PYL5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLB1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.