Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G306800.1 | Wheat | mitochondrion | 95.02 | 98.45 |
| TraesCS1A01G297600.1 | Wheat | mitochondrion | 97.51 | 97.51 |
| HORVU1Hr1G070420.1 | Barley | mitochondrion | 95.52 | 95.52 |
| Zm00001d038436_P001 | Maize | plastid | 83.58 | 84.0 |
| Os05t0473000-01 | Rice | cytosol | 86.07 | 79.72 |
| EES19683 | Sorghum | plastid | 85.07 | 79.17 |
| TraesCS3D01G342000.1 | Wheat | plastid | 79.6 | 77.67 |
| Bra028758.1-P | Field mustard | cytosol | 53.23 | 64.85 |
| Zm00001d043014_P001 | Maize | cytosol | 68.66 | 64.79 |
| KRH00319 | Soybean | cytosol | 54.73 | 62.15 |
| TraesCS2D01G087500.1 | Wheat | plastid | 65.67 | 61.68 |
| GSMUA_Achr11P... | Banana | cytosol, plastid | 48.26 | 61.39 |
| KRH49452 | Soybean | plastid | 54.23 | 61.24 |
| TraesCS4D01G191200.1 | Wheat | cytosol | 67.66 | 60.71 |
| GSMUA_Achr5P29490_001 | Banana | plastid | 46.77 | 58.02 |
| KRH73249 | Soybean | plastid | 58.71 | 56.73 |
| Bra017125.1-P | Field mustard | plastid | 57.21 | 56.37 |
| CDY54415 | Canola | cytosol | 57.21 | 56.37 |
| CDY18391 | Canola | plastid | 57.21 | 56.37 |
| Solyc05g052420.1.1 | Tomato | cytosol | 22.89 | 56.1 |
| CDY07739 | Canola | plastid | 57.71 | 56.04 |
| Bra000052.1-P | Field mustard | plastid | 57.71 | 56.04 |
| Solyc03g095780.1.1 | Tomato | plastid | 55.72 | 55.72 |
| Bra005115.1-P | Field mustard | plastid | 41.29 | 55.7 |
| CDY14471 | Canola | plastid | 57.21 | 55.56 |
| CDY04951 | Canola | cytosol | 54.23 | 55.33 |
| PGSC0003DMT400053120 | Potato | cytosol, plastid | 55.22 | 55.22 |
| PGSC0003DMT400053119 | Potato | cytosol, plastid | 55.22 | 55.22 |
| PGSC0003DMT400053102 | Potato | cytosol, plastid | 55.22 | 55.22 |
| AT2G38310.1 | Thale cress | plastid | 56.72 | 55.07 |
| CDX91449 | Canola | plastid | 56.72 | 55.07 |
| Solyc10g085310.1.1 | Tomato | plastid | 58.21 | 54.93 |
| CDY54453 | Canola | plastid | 56.72 | 54.81 |
| AT5G05440.1 | Thale cress | cytosol | 55.22 | 54.68 |
| CDX93191 | Canola | cytosol | 55.22 | 54.68 |
| CDX98844 | Canola | cytosol | 55.22 | 54.41 |
| CDY52923 | Canola | cytosol | 55.22 | 54.15 |
| Bra017012.1-P | Field mustard | cytosol | 55.22 | 54.15 |
| PGSC0003DMT400028658 | Potato | nucleus | 57.21 | 53.99 |
| CDX70150 | Canola | cytosol | 54.73 | 53.92 |
| Bra009113.1-P | Field mustard | cytosol | 54.73 | 53.92 |
| PGSC0003DMT400061535 | Potato | plastid | 58.21 | 53.67 |
| KRH76014 | Soybean | cytosol | 57.21 | 53.24 |
| Solyc10g076410.1.1 | Tomato | plastid | 53.73 | 53.2 |
| VIT_13s0067g01940.t01 | Wine grape | plastid | 55.72 | 52.83 |
| KRH14908 | Soybean | plastid | 57.21 | 52.75 |
| Solyc09g015380.1.1 | Tomato | plastid | 52.24 | 52.24 |
| CDX80959 | Canola | cytosol | 52.74 | 52.22 |
| CDY72318 | Canola | cytosol | 52.24 | 51.72 |
| Bra005853.1-P | Field mustard | cytosol | 52.24 | 51.72 |
| PGSC0003DMT400041080 | Potato | mitochondrion | 53.23 | 51.69 |
| AT2G40330.1 | Thale cress | cytosol | 55.22 | 51.63 |
| VIT_08s0058g00470.t01 | Wine grape | plastid | 58.21 | 51.54 |
| CDX74796 | Canola | cytosol, nucleus, plastid | 54.23 | 51.42 |
| CDY24911 | Canola | cytosol, mitochondrion | 54.23 | 51.17 |
| PGSC0003DMT400069734 | Potato | mitochondrion, plastid | 52.74 | 50.96 |
| CDY18867 | Canola | cytosol, mitochondrion, nucleus, plastid | 53.73 | 50.94 |
| Bra000184.1-P | Field mustard | cytosol, mitochondrion | 53.73 | 50.94 |
| CDY07608 | Canola | cytosol, mitochondrion | 53.73 | 50.94 |
| Bra004967.1-P | Field mustard | mitochondrion | 53.23 | 50.47 |
| PGSC0003DMT400075056 | Potato | plastid | 53.73 | 50.47 |
| TraesCS3D01G161500.1 | Wheat | cytosol, nucleus, plastid | 49.75 | 49.75 |
| TraesCS7D01G364600.1 | Wheat | cytosol | 48.76 | 49.75 |
| OQU87775 | Sorghum | endoplasmic reticulum, extracellular | 65.67 | 48.53 |
| TraesCS1D01G195300.1 | Wheat | cytosol | 47.76 | 45.07 |
| Zm00001d012475_P001 | Maize | cytosol | 69.15 | 44.55 |
| Solyc06g050500.2.1 | Tomato | plastid | 60.2 | 44.0 |
| KRH31193 | Soybean | cytosol, golgi, plastid | 56.22 | 43.97 |
| TraesCS1D01G126900.1 | Wheat | cytosol | 43.28 | 42.44 |
| TraesCS7D01G328000.1 | Wheat | cytosol | 34.83 | 35.53 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G293600.1 | EnsemblPlantsGene:TraesCS1D01G293600 | Gene3D:3.30.530.20 | InterPro:IPR023393 | InterPro:Polyketide_cyclase/dehydratase | InterPro:START-like_dom_sf |
| PANTHER:PTHR31213 | PANTHER:PTHR31213:SF21 | PFAM:PF10604 | SEG:seg | SUPFAM:SSF55961 | TIGR:cd07821 |
| MapMan:11.1.2.1.1.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1D:+:392696910..392697515
Molecular Weight (calculated)
21243.2 Da
IEP (calculated)
8.766
GRAVY (calculated)
-0.055
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MPYTASRPSA PQRARVAAVG AGWKAAAHAA SCGAVPGEVA RHHEHAAGAG QCCSAVVQAI EAPVGAVWAV VRRFDRPQAY KHFIRSCRVV DGDGGAVGSV
101: REVRVVSGLP ATSSRERLEI LDDERRVLSF RVVGGEHRLS NYRSVTTVHE AAPAGAVVVE SYVVDVPPGN TADETRTFVD TIVRCNLQSL ARTAQQLAVP
201: A
101: REVRVVSGLP ATSSRERLEI LDDERRVLSF RVVGGEHRLS NYRSVTTVHE AAPAGAVVVE SYVVDVPPGN TADETRTFVD TIVRCNLQSL ARTAQQLAVP
201: A
001: MSSSPAVKGL TDEEQKTLEP VIKTYHQFEP DPTTCTSLIT QRIHAPASVV WPLIRRFDNP ERYKHFVKRC RLISGDGDVG SVREVTVISG LPASTSTERL
101: EFVDDDHRVL SFRVVGGEHR LKNYKSVTSV NEFLNQDSGK VYTVVLESYT VDIPEGNTEE DTKMFVDTVV KLNLQKLGVA ATSAPMHDDE
101: EFVDDDHRVL SFRVVGGEHR LKNYKSVTSV NEFLNQDSGK VYTVVLESYT VDIPEGNTEE DTKMFVDTVV KLNLQKLGVA ATSAPMHDDE
Arabidopsis Description
PYL2Abscisic acid receptor PYL2 [Source:UniProtKB/Swiss-Prot;Acc:O80992]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.