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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 8
  • cytosol 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, plasma membrane, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:cytosol
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plasma membrane
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc03g061590.2.1
Solyc08g062650.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G40330.1 Solyc08g062650.2.1 AT1G72770.1 19407142
AT2G40330.1 Solyc08g062650.2.1 AT1G72770.1 19624469
AT2G40330.1 Solyc03g061590.2.1 AT2G20000.1 17944809
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400061535 Potato plastid 73.45 92.66
Solyc03g095780.1.1 Tomato plastid 57.09 78.11
Solyc05g052420.1.1 Tomato cytosol 22.55 75.61
Solyc09g015380.1.1 Tomato plastid 49.09 67.16
KRH73249 Soybean plastid 49.82 65.87
Solyc10g085310.1.1 Tomato plastid 50.91 65.73
Solyc10g076410.1.1 Tomato plastid 48.0 65.02
TraesCS4A01G114400.1 Wheat cytosol 40.73 62.57
KRH14908 Soybean plastid 48.73 61.47
TraesCS1B01G306800.1 Wheat mitochondrion 42.55 60.31
TraesCS1D01G293600.1 Wheat mitochondrion, plastid 44.0 60.2
Zm00001d038436_P001 Maize plastid 43.64 60.0
TraesCS1A01G297600.1 Wheat mitochondrion 43.64 59.7
Solyc08g065410.1.1 Tomato cytosol 31.64 59.59
GSMUA_Achr9P04600_001 Banana cytosol 30.91 59.44
GSMUA_Achr6P32790_001 Banana cytosol 45.45 59.24
HORVU1Hr1G070420.1 Barley mitochondrion 42.55 58.21
HORVU3Hr1G039010.1 Barley plastid 43.27 57.77
HORVU3Hr1G088100.1 Barley plastid 43.27 57.77
CDX93191 Canola cytosol 42.55 57.64
TraesCS3B01G380300.1 Wheat mitochondrion, plastid 43.27 57.49
TraesCS3D01G342000.1 Wheat plastid 42.91 57.28
TraesCS2D01G087500.1 Wheat plastid 44.36 57.01
TraesCS3A01G348400.1 Wheat plastid 42.55 56.8
CDY52923 Canola cytosol 42.18 56.59
Bra017012.1-P Field mustard cytosol 42.18 56.59
EES19683 Sorghum plastid 44.36 56.48
GSMUA_Achr11P... Banana cytosol, plastid 32.36 56.33
TraesCS2B01G105300.1 Wheat plastid 44.36 56.22
AT2G40330.1 Thale cress cytosol 43.64 55.81
Os05t0473000-01 Rice cytosol 44.0 55.76
CDX74796 Canola cytosol, nucleus, plastid 42.55 55.19
GSMUA_AchrUn_... Banana plastid 31.64 55.06
GSMUA_Achr9P17980_001 Banana cytosol 29.82 55.03
KRH31193 Soybean cytosol, golgi, plastid 51.27 54.86
GSMUA_Achr5P29490_001 Banana plastid 32.0 54.32
Bra004967.1-P Field mustard mitochondrion 41.82 54.25
Zm00001d043014_P001 Maize cytosol 41.82 53.99
Bra000184.1-P Field mustard cytosol, mitochondrion 41.45 53.77
CDY07608 Canola cytosol, mitochondrion 41.45 53.77
Zm00001d047705_P001 Maize plastid 42.55 53.67
TraesCS4B01G189800.1 Wheat cytosol 43.64 53.57
HORVU4Hr1G055220.1 Barley cytosol 43.27 53.12
TraesCS4D01G191200.1 Wheat cytosol 43.27 53.12
CDY24911 Canola cytosol, mitochondrion 41.09 53.05
CDY18867 Canola cytosol, mitochondrion, nucleus, plastid 40.73 52.83
EER92405 Sorghum plastid 42.55 52.7
Zm00001d028793_P001 Maize cytosol, mitochondrion, plastid 41.82 52.27
Os03t0297600-01 Rice cytosol 42.91 51.53
Solyc03g007310.2.1 Tomato cytosol 33.82 50.27
Solyc12g095970.1.1 Tomato cytosol 34.55 50.0
GSMUA_Achr8P21220_001 Banana cytosol 30.55 49.41
Solyc12g055990.1.1 Tomato cytosol 32.36 49.17
Solyc01g095700.2.1 Tomato cytosol 32.73 48.39
Solyc08g082180.2.1 Tomato cytosol 32.73 47.62
Os01t0827800-00 Rice plastid 42.18 45.31
Solyc06g061180.1.1 Tomato nucleus 34.55 44.6
GSMUA_Achr10P... Banana cytosol, plastid 31.64 43.94
TraesCS2A01G089400.1 Wheat plastid 44.36 42.66
Solyc08g076960.1.1 Tomato extracellular 34.55 41.13
OQU87775 Sorghum endoplasmic reticulum, extracellular 40.36 40.81
Solyc02g076770.1.1 Tomato cytosol 31.64 39.91
Zm00001d012475_P001 Maize cytosol 42.55 37.5
Protein Annotations
EnsemblPlants:Solyc06g050500.2.1EnsemblPlantsGene:Solyc06g050500.2Gene3D:3.30.530.20GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:IPR023393InterPro:Polyketide_cyclase/dehydrataseInterPro:START-like_dom_sfPANTHER:PTHR31213PANTHER:PTHR31213:SF48PFAM:PF10604
SEG:segSUPFAM:SSF55961TMHMM:TMhelixUniParc:UPI0002766B1BUniProt:K4C5J4MapMan:11.1.2.1.1.1
Description
No Description!
Coordinates
chr6:-:33175324..33176398
Molecular Weight (calculated)
30510.7 Da
IEP (calculated)
7.129
GRAVY (calculated)
0.084
Length
275 amino acids
Sequence
(BLAST)
001: MPSSLQLHRI NPTTATLAVK QPQLSQATTW FSPVSTSVPD NVLHHHTHVV GPNQCCSAVL QSISAPIDTV WSLVRRFDNP QAYKHFLKSC HVIVGDGDVG
101: TLREVRVVSG LPAGSSTERL EILDDEKHVL SFSVVGGDHR LNNYRSVTTL HRAAEEGSTV VVESYVVDVP QGNTKEETCV FVDTIVRCNL QSLAQIAQNL
201: AKTSKNHDED PQLKIHRLVD FVDCKVGSCK CLNVLLWYIM VCCVFCITTN HFVTITYILL NIFKVLTVKD IFLSS
Best Arabidopsis Sequence Match ( AT2G38310.1 )
(BLAST)
001: MLAVHRPSSA VSDGDSVQIP MMIASFQKRF PSLSRDSTAA RFHTHEVGPN QCCSAVIQEI SAPISTVWSV VRRFDNPQAY KHFLKSCSVI GGDGDNVGSL
101: RQVHVVSGLP AASSTERLDI LDDERHVISF SVVGGDHRLS NYRSVTTLHP SPISGTVVVE SYVVDVPPGN TKEETCDFVD VIVRCNLQSL AKIAENTAAE
201: SKKKMSL
Arabidopsis Description
PYL4Abscisic acid receptor PYL4 [Source:UniProtKB/Swiss-Prot;Acc:O80920]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.