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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • plastid 2
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
iPSORT:plastid
MultiLoc:cytosol
PProwler:plastid
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX72943
CDX96432
CDY35917
CDY40468

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G40330.1 CDX72943 AT1G72770.1 19407142
AT2G40330.1 CDX96432 AT1G72770.1 19407142
AT2G40330.1 CDX72943 AT1G72770.1 19624469
AT2G40330.1 CDX96432 AT1G72770.1 19624469
AT2G40330.1 CDY35917 AT2G20000.1 17944809
AT2G40330.1 CDY40468 AT2G20000.1 17944809
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra017012.1-P Field mustard cytosol 98.52 97.56
CDY52923 Canola cytosol 98.52 97.56
CDX74796 Canola cytosol, nucleus, plastid 87.19 83.49
CDY07608 Canola cytosol, mitochondrion 87.19 83.49
CDY24911 Canola cytosol, mitochondrion 87.19 83.1
AT2G40330.1 Thale cress cytosol 87.68 82.79
CDY18867 Canola cytosol, mitochondrion, nucleus, plastid 85.71 82.08
TraesCS4A01G114400.1 Wheat cytosol 52.22 59.22
Solyc05g052420.1.1 Tomato cytosol 23.65 58.54
PGSC0003DMT400053102 Potato cytosol, plastid 56.65 57.21
PGSC0003DMT400053119 Potato cytosol, plastid 56.65 57.21
PGSC0003DMT400053120 Potato cytosol, plastid 56.65 57.21
Solyc03g095780.1.1 Tomato plastid 56.65 57.21
KRH73249 Soybean plastid 58.13 56.73
TraesCS1B01G306800.1 Wheat mitochondrion 54.19 56.7
CDY68675 Canola cytosol 44.34 55.56
CDY58053 Canola cytosol 44.34 55.56
TraesCS1D01G293600.1 Wheat mitochondrion, plastid 54.68 55.22
Zm00001d038436_P001 Maize plastid 54.19 55.0
CDY54415 Canola cytosol 55.17 54.9
CDY18391 Canola plastid 55.17 54.9
TraesCS1A01G297600.1 Wheat mitochondrion 54.19 54.73
CDX91449 Canola plastid 55.66 54.59
CDY07739 Canola plastid 55.66 54.59
CDY14471 Canola plastid 55.66 54.59
HORVU1Hr1G070420.1 Barley mitochondrion 53.69 54.23
TraesCS3B01G380300.1 Wheat mitochondrion, plastid 55.17 54.11
HORVU3Hr1G088100.1 Barley plastid 54.68 53.88
HORVU3Hr1G039010.1 Barley plastid 54.68 53.88
KRH14908 Soybean plastid 57.64 53.67
TraesCS3D01G342000.1 Wheat plastid 54.19 53.4
CDY54453 Canola plastid 54.68 53.37
TraesCS3A01G348400.1 Wheat plastid 53.69 52.91
PGSC0003DMT400061535 Potato plastid 56.65 52.75
Os05t0473000-01 Rice cytosol 56.16 52.53
GSMUA_Achr9P04600_001 Banana cytosol 36.95 52.45
GSMUA_Achr6P32790_001 Banana cytosol 54.19 52.13
PGSC0003DMT400069734 Potato mitochondrion, plastid 53.2 51.92
EES19683 Sorghum plastid 55.17 51.85
CDX80959 Canola cytosol 51.72 51.72
CDY72318 Canola cytosol 51.72 51.72
Zm00001d043014_P001 Maize cytosol 54.19 51.64
CDX98844 Canola cytosol 51.72 51.47
CDX70150 Canola cytosol 51.23 50.98
CDY04951 Canola cytosol 49.26 50.76
TraesCS2D01G087500.1 Wheat plastid 53.2 50.47
HORVU4Hr1G055220.1 Barley cytosol 55.66 50.45
GSMUA_Achr9P17980_001 Banana cytosol 36.95 50.34
TraesCS4B01G189800.1 Wheat cytosol 55.17 50.0
TraesCS4D01G191200.1 Wheat cytosol 55.17 50.0
TraesCS2B01G105300.1 Wheat plastid 53.2 49.77
EER92405 Sorghum plastid 54.19 49.55
Zm00001d047705_P001 Maize plastid 53.2 49.54
CDX78879 Canola cytosol 40.39 49.4
CDX99450 Canola cytosol 40.39 49.4
CDY58019 Canola cytosol 40.39 49.4
GSMUA_AchrUn_... Banana plastid 38.42 49.37
GSMUA_Achr11P... Banana cytosol, plastid 37.93 48.73
Zm00001d028793_P001 Maize cytosol, mitochondrion, plastid 52.22 48.18
Os03t0297600-01 Rice cytosol 54.19 48.03
GSMUA_Achr5P29490_001 Banana plastid 37.93 47.53
CDY11503 Canola cytosol 42.36 45.74
CDX76731 Canola cytosol 41.87 45.21
CDY53905 Canola cytosol 41.38 44.92
KRH31193 Soybean cytosol, golgi, plastid 56.65 44.75
GSMUA_Achr8P21220_001 Banana cytosol 37.44 44.71
CDY25052 Canola cytosol 40.89 44.38
CDX90028 Canola cytosol 40.89 44.15
Os01t0827800-00 Rice plastid 55.66 44.14
CDY15183 Canola cytosol 40.39 43.85
CDY04688 Canola cytosol 39.9 43.55
CDX89219 Canola cytosol 39.41 43.24
CDX90440 Canola cytosol 40.39 42.93
CDY01498 Canola cytosol 40.39 42.93
Solyc06g050500.2.1 Tomato plastid 57.64 42.55
CDY70860 Canola cytosol 38.42 41.94
CDY69797 Canola cytosol 39.41 41.88
CDY49462 Canola cytosol 37.93 41.85
CDY61488 Canola cytosol 37.93 41.85
CDY70517 Canola cytosol 37.93 41.62
CDY64350 Canola cytosol 37.44 41.53
CDX96197 Canola cytosol 38.42 41.49
CDY38728 Canola cytosol 37.44 41.3
CDX74368 Canola cytosol 38.92 40.93
CDY27022 Canola cytosol 37.44 40.43
CDX91871 Canola cytosol 38.42 40.41
GSMUA_Achr10P... Banana cytosol, plastid 38.42 39.39
CDY22516 Canola plastid 38.42 38.05
CDX82120 Canola plastid 38.42 38.05
CDY48030 Canola plastid 38.42 38.05
OQU87775 Sorghum endoplasmic reticulum, extracellular 50.74 37.87
TraesCS2A01G089400.1 Wheat plastid 53.2 37.76
CDY58505 Canola nucleus 38.92 37.62
CDY68316 Canola nucleus 34.98 37.17
CDY08877 Canola cytosol 28.08 36.77
CDX76554 Canola cytosol 28.08 36.77
CDX77691 Canola nucleus 38.92 36.74
CDY03194 Canola nucleus 34.48 36.65
CDY07165 Canola cytosol 10.34 35.0
Zm00001d012475_P001 Maize cytosol 52.22 33.97
Protein Annotations
EnsemblPlants:CDX93191EnsemblPlantsGene:GSBRNA2T00155126001Gene3D:3.30.530.20InterPro:IPR023393InterPro:Polyketide_cyclase/dehydrataseInterPro:START-like_dom_sf
PANTHER:PTHR31213PANTHER:PTHR31213:SF3PFAM:PF10604ProteinID:CDX93191ProteinID:CDX93191.1SEG:seg
SUPFAM:SSF55961UniParc:UPI0004EF3ADBMapMan:11.1.2.1.1.1:::
Description
BnaC04g47050D
Coordinates
chrLK031875:+:209542..210153
Molecular Weight (calculated)
22503.5 Da
IEP (calculated)
6.581
GRAVY (calculated)
-0.353
Length
203 amino acids
Sequence
(BLAST)
001: MPTSLQFQRP STAAESANLH HKQLQKMSLT RGMADVPEHV ELSHTHVVEP SQCFSVVVQD VDAPASAVWS ILSRFEHPQA YKHFVRSCHV AAGDGREVGS
101: VREVRVVSGL PAAFSLERLE IMDDDRHVMS FSVVGGDHRL QNYRSVTTVH ESSDNNKKTR VVESYVVDVP AGNDKDETCS FADTIVRCNL QSLAKLAENP
201: PRI
Best Arabidopsis Sequence Match ( AT2G40330.1 )
(BLAST)
001: MPTSIQFQRS STAAEAANAT VRNYPHHHQK QVQKVSLTRG MADVPEHVEL SHTHVVGPSQ CFSVVVQDVE APVSTVWSIL SRFEHPQAYK HFVKSCHVVI
101: GDGREVGSVR EVRVVSGLPA AFSLERLEIM DDDRHVISFS VVGGDHRLMN YKSVTTVHES EEDSDGKKRT RVVESYVVDV PAGNDKEETC SFADTIVRCN
201: LQSLAKLAEN TSKFS
Arabidopsis Description
PYL6Abscisic acid receptor PYL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8E3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.