CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH41728

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40330.1	KRH41728	AT2G20000.1	17944809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14908	Soybean	plastid	91.83	87.61
KRH00319	Soybean	cytosol	57.69	67.8
Solyc05g052420.1.1	Tomato	cytosol	26.44	67.07
KRH49452	Soybean	plastid	56.25	65.73
Solyc03g095780.1.1	Tomato	plastid	62.5	64.68
PGSC0003DMT400053102	Potato	cytosol, plastid	61.06	63.18
PGSC0003DMT400053120	Potato	cytosol, plastid	61.06	63.18
PGSC0003DMT400053119	Potato	cytosol, plastid	61.06	63.18
PGSC0003DMT400061535	Potato	plastid	64.9	61.93
GSMUA_Achr9P04600_001	Banana	cytosol	42.31	61.54
Zm00001d038436_P001	Maize	plastid	59.13	61.5
KRH31193	Soybean	cytosol, golgi, plastid	75.96	61.48
TraesCS4A01G114400.1	Wheat	cytosol	52.88	61.45
TraesCS1B01G306800.1	Wheat	mitochondrion	56.25	60.31
KRH76014	Soybean	cytosol	62.02	59.72
TraesCS1A01G297600.1	Wheat	mitochondrion	56.73	58.71
TraesCS1D01G293600.1	Wheat	mitochondrion, plastid	56.73	58.71
EES19683	Sorghum	plastid	60.58	58.33
HORVU1Hr1G070420.1	Barley	mitochondrion	56.25	58.21
CDX93191	Canola	cytosol	56.73	58.13
GSMUA_Achr6P32790_001	Banana	cytosol	58.65	57.82
PGSC0003DMT400069734	Potato	mitochondrion, plastid	57.69	57.69
CDY52923	Canola	cytosol	56.73	57.56
Bra017012.1-P	Field mustard	cytosol	56.73	57.56
TraesCS3B01G380300.1	Wheat	mitochondrion, plastid	57.21	57.49
HORVU3Hr1G039010.1	Barley	plastid	56.73	57.28
HORVU3Hr1G088100.1	Barley	plastid	56.73	57.28
TraesCS3A01G348400.1	Wheat	plastid	56.73	57.28
TraesCS3D01G342000.1	Wheat	plastid	56.73	57.28
GSMUA_AchrUn_...	Banana	plastid	43.27	56.96
CDX74796	Canola	cytosol, nucleus, plastid	56.73	55.66
AT2G40330.1	Thale cress	cytosol	57.21	55.35
Bra004967.1-P	Field mustard	mitochondrion	55.77	54.72
TraesCS2D01G087500.1	Wheat	plastid	56.25	54.67
TraesCS2B01G105300.1	Wheat	plastid	56.73	54.38
Os05t0473000-01	Rice	cytosol	56.73	54.38
GSMUA_Achr9P17980_001	Banana	cytosol	38.94	54.36
Bra000184.1-P	Field mustard	cytosol, mitochondrion	54.33	53.3
CDY07608	Canola	cytosol, mitochondrion	54.33	53.3
CDY18867	Canola	cytosol, mitochondrion, nucleus, plastid	54.33	53.3
EER92405	Sorghum	plastid	56.73	53.15
Zm00001d047705_P001	Maize	plastid	55.29	52.75
Zm00001d043014_P001	Maize	cytosol	53.85	52.58
CDY24911	Canola	cytosol, mitochondrion	53.85	52.58
GSMUA_Achr11P...	Banana	cytosol, plastid	39.9	52.53
TraesCS4D01G191200.1	Wheat	cytosol	56.25	52.23
TraesCS4B01G189800.1	Wheat	cytosol	56.25	52.23
Zm00001d028793_P001	Maize	cytosol, mitochondrion, plastid	54.81	51.82
HORVU4Hr1G055220.1	Barley	cytosol	55.77	51.79
GSMUA_Achr8P21220_001	Banana	cytosol	41.83	51.18
Os03t0297600-01	Rice	cytosol	56.25	51.09
GSMUA_Achr5P29490_001	Banana	plastid	38.94	50.0
Solyc06g050500.2.1	Tomato	plastid	65.87	49.82
KRH52194	Soybean	cytosol	44.23	49.2
KRH61500	Soybean	cytosol	43.75	48.15
KRH47929	Soybean	cytosol	42.79	48.11
KRH05492	Soybean	cytosol	42.79	47.34
KRH18155	Soybean	cytosol	43.27	47.12
KRH11022	Soybean	cytosol	41.35	46.49
KRH45453	Soybean	cytosol	47.12	46.23
KRH65286	Soybean	cytosol	20.19	46.15
KRH65845	Soybean	cytosol	42.79	46.11
KRH53449	Soybean	cytosol	42.31	46.07
KRH75621	Soybean	cytosol	47.12	45.79
GSMUA_Achr10P...	Banana	cytosol, plastid	43.27	45.45
KRH21267	Soybean	cytosol	40.38	45.41
Os01t0827800-00	Rice	plastid	54.81	44.53
KRH74424	Soybean	cytosol	46.63	43.89
KRH15519	Soybean	cytosol	43.27	42.86
KRH16733	Soybean	cytosol	21.15	41.9
TraesCS2A01G089400.1	Wheat	plastid	56.25	40.91
KRH06494	Soybean	cytosol, extracellular, vacuole	37.5	40.84
OQU87775	Sorghum	endoplasmic reticulum, extracellular	51.92	39.71
KRH39536	Soybean	plastid	47.12	36.84
Zm00001d012475_P001	Maize	cytosol	53.85	35.9

Protein Annotations

EMBL:ACUP02001272	EnsemblPlants:KRH73249	EnsemblPlantsGene:GLYMA_02G261900	EntrezGene:100798803	Gene3D:3.30.530.20	InterPro:IPR023393
InterPro:Polyketide_cyclase/dehydratase	InterPro:START-like_dom_sf	PANTHER:PTHR31213	PANTHER:PTHR31213:SF3	PFAM:PF10604	ProteinID:KRH73249
ProteinID:KRH73249.1	SUPFAM:SSF55961	UniParc:UPI0002336E28	UniProt:I1JID6	MapMan:11.1.2.1.1.1	:

Description

hypothetical protein

Coordinates

chr2:+:44792699..44793865

Molecular Weight (calculated)

22343.6 Da

IEP (calculated)

7.251

GRAVY (calculated)

-0.030

Length

208 amino acids

Sequence
(BLAST)

001: MTSLQFHRFN PATDTSTAIA NGVNCPKPPS TLRLLAKVSL SVPETVARHH AHPVGPNQCC SVVIQAIDAP VSAVWPVVRR FDNPQAYKHF VKSCHVVAAA
101: GGGEDGIRVG ALREVRVVSG LPAVSSTERL EILDDERHVM SFSVVGGDHR LRNYRSVTTL HGDGNGGTVV IESYVVDVPP GNTKEETCVF VDTIVRCNLQ
201: SLAQIAET

Best Arabidopsis Sequence Match ( AT2G38310.1 )
(BLAST)

001: MLAVHRPSSA VSDGDSVQIP MMIASFQKRF PSLSRDSTAA RFHTHEVGPN QCCSAVIQEI SAPISTVWSV VRRFDNPQAY KHFLKSCSVI GGDGDNVGSL
101: RQVHVVSGLP AASSTERLDI LDDERHVISF SVVGGDHRLS NYRSVTTLHP SPISGTVVVE SYVVDVPPGN TKEETCDFVD VIVRCNLQSL AKIAENTAAE
201: SKKKMSL

Arabidopsis Description

PYL4Abscisic acid receptor PYL4 [Source:UniProtKB/Swiss-Prot;Acc:O80920]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.