Factsheet for PGSC0003DMT400053102

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006585
PGSC0003DMT400006608
PGSC0003DMT400083452

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40330.1	PGSC0003DMT400006608	AT1G72770.1	19407142
AT2G40330.1	PGSC0003DMT400006608	AT1G72770.1	19624469
AT2G40330.1	PGSC0003DMT400006585	AT2G20000.1	17944809
AT2G40330.1	PGSC0003DMT400083452	AT2G20000.1	17944809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400053119	Potato	cytosol, plastid	100.0	100.0
PGSC0003DMT400053120	Potato	cytosol, plastid	100.0	100.0
Solyc03g095780.1.1	Tomato	plastid	95.02	95.02
PGSC0003DMT400061535	Potato	plastid	78.61	72.48
PGSC0003DMT400069734	Potato	mitochondrion, plastid	70.65	68.27
PGSC0003DMT400075056	Potato	plastid	68.16	64.02
PGSC0003DMT400028658	Potato	nucleus	66.67	62.91
KRH73249	Soybean	plastid	63.18	61.06
PGSC0003DMT400041080	Potato	mitochondrion	62.69	60.87
TraesCS4A01G114400.1	Wheat	cytosol	53.73	60.34
KRH14908	Soybean	plastid	63.18	58.26
CDX93191	Canola	cytosol	57.21	56.65
GSMUA_Achr9P04600_001	Banana	cytosol	40.3	56.64
TraesCS1B01G306800.1	Wheat	mitochondrion	54.23	56.19
Bra017012.1-P	Field mustard	cytosol	57.21	56.1
CDY52923	Canola	cytosol	57.21	56.1
Zm00001d038436_P001	Maize	plastid	55.72	56.0
GSMUA_Achr6P32790_001	Banana	cytosol	58.71	55.92
TraesCS1A01G297600.1	Wheat	mitochondrion	55.22	55.22
TraesCS1D01G293600.1	Wheat	mitochondrion, plastid	55.22	55.22
Bra004967.1-P	Field mustard	mitochondrion	58.21	55.19
CDX74796	Canola	cytosol, nucleus, plastid	58.21	55.19
TraesCS3B01G380300.1	Wheat	mitochondrion, plastid	55.72	54.11
AT2G40330.1	Thale cress	cytosol	57.71	53.95
HORVU1Hr1G070420.1	Barley	mitochondrion	53.73	53.73
TraesCS3A01G348400.1	Wheat	plastid	54.73	53.4
HORVU3Hr1G088100.1	Barley	plastid	54.73	53.4
HORVU3Hr1G039010.1	Barley	plastid	54.73	53.4
TraesCS3D01G342000.1	Wheat	plastid	54.73	53.4
CDY18867	Canola	cytosol, mitochondrion, nucleus, plastid	56.22	53.3
TraesCS2D01G087500.1	Wheat	plastid	56.72	53.27
TraesCS2B01G105300.1	Wheat	plastid	57.21	53.0
EES19683	Sorghum	plastid	56.72	52.78
GSMUA_Achr9P17980_001	Banana	cytosol	38.81	52.35
Os05t0473000-01	Rice	cytosol	56.22	52.07
CDY07608	Canola	cytosol, mitochondrion	54.73	51.89
Bra000184.1-P	Field mustard	cytosol, mitochondrion	54.73	51.89
GSMUA_AchrUn_...	Banana	plastid	40.3	51.27
Zm00001d043014_P001	Maize	cytosol	54.23	51.17
CDY24911	Canola	cytosol, mitochondrion	54.23	51.17
Zm00001d047705_P001	Maize	plastid	55.22	50.92
GSMUA_Achr11P...	Banana	cytosol, plastid	39.8	50.63
TraesCS4D01G191200.1	Wheat	cytosol	56.22	50.45
TraesCS4B01G189800.1	Wheat	cytosol	56.22	50.45
EER92405	Sorghum	plastid	55.22	50.0
Zm00001d028793_P001	Maize	cytosol, mitochondrion, plastid	54.73	50.0
HORVU4Hr1G055220.1	Barley	cytosol	55.72	50.0
PGSC0003DMT400012888	Potato	cytosol	43.78	49.72
PGSC0003DMT400023511	Potato	cytosol	45.27	49.19
PGSC0003DMT400000606	Potato	cytosol	45.27	48.92
GSMUA_Achr5P29490_001	Banana	plastid	39.3	48.77
Os03t0297600-01	Rice	cytosol	55.22	48.47
KRH31193	Soybean	cytosol, golgi, plastid	61.69	48.25
PGSC0003DMT400075340	Potato	cytosol	45.27	47.89
PGSC0003DMT400077008	Potato	cytosol	44.78	47.87
PGSC0003DMT400031686	Potato	cytosol	44.78	47.62
GSMUA_Achr8P21220_001	Banana	cytosol	39.3	46.47
Os01t0827800-00	Rice	plastid	56.22	44.14
PGSC0003DMT400005378	Potato	nucleus	45.77	43.19
PGSC0003DMT400026521	Potato	cytosol	40.3	42.41
PGSC0003DMT400045156	Potato	nucleus	47.76	41.56
GSMUA_Achr10P...	Banana	cytosol, plastid	40.8	41.41
TraesCS2A01G089400.1	Wheat	plastid	57.21	40.21
OQU87775	Sorghum	endoplasmic reticulum, extracellular	51.74	38.24
Zm00001d012475_P001	Maize	cytosol	55.22	35.58

Protein Annotations

EnsemblPlants:PGSC0003DMT400053102	EnsemblPlantsGene:PGSC0003DMG400020599	EntrezGene:102580319	EntrezGene:102580652	EntrezGene:102580990	Gene3D:3.30.530.20
InterPro:IPR023393	InterPro:Polyketide_cyclase/dehydratase	InterPro:START-like_dom_sf	PANTHER:PTHR31213	PANTHER:PTHR31213:SF48	PFAM:PF10604
PGSC:PGSC0003DMG400020599	RefSeq:XP_006356474.1	RefSeq:XP_006356475.1	RefSeq:XP_006356476.1	SUPFAM:SSF55961	UniParc:UPI00029523B3
UniProt:M1BUF0	MapMan:11.1.2.1.1.1	:	:	:	:

Description

Gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400020599]

Coordinates

chr3:+:35848465..35849370

Molecular Weight (calculated)

22159.3 Da

IEP (calculated)

6.422

GRAVY (calculated)

-0.074

Length

201 amino acids

Sequence
(BLAST)

001: MPCSLQLQRI NHTITTTLAG NFHKPPQPTW IIPVQFSVPN NHLHYHTHAV SPNQCCSAVV QTISAPIDAV WSLVRRFDNP QAYKHFLKSC HVIVGDGNVG
101: TLREVQVISG LPAASSKERL EILDDDEHVI SFSVIGGDHR LNNYRSVTTL HPADDENGTV VVESYVVDIP TGNTKEETCV FVDTIVRCNL QSLAQIAIAN
201: C

Best Arabidopsis Sequence Match ( AT1G01360.1 )
(BLAST)

001: MMDGVEGGTA MYGGLETVQY VRTHHQHLCR ENQCTSALVK HIKAPLHLVW SLVRRFDQPQ KYKPFVSRCT VIGDPEIGSL REVNVKSGLP ATTSTERLEL
101: LDDEEHILGI KIIGGDHRLK NYSSILTVHP EIIEGRAGTM VIESFVVDVP QGNTKDETCY FVEALIRCNL KSLADVSERL ASQDITQ

Arabidopsis Description

PYL9RCAR1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4H4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.