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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400006608

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G27920.1 PGSC0003DMT400006608 AT1G72770.1 19407142
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc03g007310.2.1 Tomato cytosol 97.3 97.3
VIT_16s0050g02620.t01 Wine grape cytosol 84.86 84.86
PGSC0003DMT400012888 Potato cytosol 76.22 79.66
KRH18155 Soybean cytosol 82.16 79.58
KRH65845 Soybean cytosol 82.7 79.27
CDY49462 Canola cytosol 77.3 77.72
CDY61488 Canola cytosol 77.3 77.72
PGSC0003DMT400031686 Potato cytosol 78.92 77.25
Bra003077.1-P Field mustard cytosol 76.76 77.17
CDY64350 Canola cytosol 76.22 77.05
GSMUA_Achr10P... Banana cytosol 77.3 76.88
CDY38728 Canola cytosol 76.22 76.63
AT5G53160.2 Thale cress cytosol, nucleus, peroxisome 77.84 76.6
CDX96197 Canola cytosol 77.84 76.6
Bra029093.1-P Field mustard cytosol 75.68 76.09
Bra022634.1-P Field mustard cytosol 76.76 75.53
CDY27022 Canola cytosol 76.22 75.0
GSMUA_Achr10P... Banana cytosol 75.14 74.73
GSMUA_Achr2P19970_001 Banana cytosol 74.59 74.19
PGSC0003DMT400000606 Potato cytosol 74.05 73.66
GSMUA_AchrUn_... Banana cytosol 74.05 73.66
KRH53449 Soybean cytosol 75.14 72.77
CDY70517 Canola cytosol 70.81 70.81
Bra026299.1-P Field mustard cytosol 70.27 70.65
CDX89219 Canola cytosol 70.27 70.27
AT4G27920.1 Thale cress cytosol 69.19 69.95
HORVU0Hr1G032390.2 Barley cytosol, extracellular 32.43 69.77
GSMUA_Achr3P03480_001 Banana cytosol 76.22 68.45
TraesCS1A01G126800.1 Wheat cytosol 72.97 65.85
TraesCS1B01G145800.1 Wheat cytosol 72.97 65.85
TraesCS1D01G126900.1 Wheat cytosol 72.97 65.85
Os02t0255500-01 Rice cytosol 72.43 65.69
Os05t0213500-01 Rice cytosol, nucleus 73.51 65.07
Zm00001d037719_P001 Maize cytosol 69.19 64.97
Zm00001d010445_P001 Maize cytosol 68.65 64.47
EES17886 Sorghum cytosol 68.65 64.47
Zm00001d016105_P001 Maize cytosol 72.97 63.68
GSMUA_Achr8P19910_001 Banana mitochondrion 71.35 63.16
EES04864 Sorghum cytosol 70.81 62.09
GSMUA_Achr2P15420_001 Banana cytosol, mitochondrion, nucleus, plastid 75.14 60.96
KRH65286 Soybean cytosol 29.73 60.44
Zm00001d053396_P001 Maize cytosol 69.73 59.45
KRH16733 Soybean cytosol 33.51 59.05
Zm00001d002533_P001 Maize cytosol 39.46 57.94
Os02t0255300-00 Rice cytosol, plastid 54.05 55.56
Os06t0528300-00 Rice cytosol 58.92 52.91
Os06t0527800-01 Rice cytosol 57.84 51.94
TraesCS7B01G232100.1 Wheat cytoskeleton, cytosol, nucleus 54.59 51.79
Os06t0526400-00 Rice cytosol 54.59 51.53
TraesCS7D01G328000.1 Wheat cytosol 53.51 50.25
HORVU7Hr1G079270.1 Barley cytosol 53.51 50.25
TraesCS7A01G350800.1 Wheat cytosol 51.35 48.22
HORVU1Hr1G030390.2 Barley extracellular, mitochondrion, plasma membrane 72.97 46.39
PGSC0003DMT400075340 Potato cytosol 47.57 46.32
PGSC0003DMT400053120 Potato cytosol, plastid 49.19 45.27
PGSC0003DMT400053119 Potato cytosol, plastid 49.19 45.27
PGSC0003DMT400053102 Potato cytosol, plastid 49.19 45.27
PGSC0003DMT400077008 Potato cytosol 45.95 45.21
PGSC0003DMT400041080 Potato mitochondrion 50.27 44.93
HORVU3Hr1G054230.1 Barley mitochondrion 38.38 44.65
PGSC0003DMT400069734 Potato mitochondrion, plastid 47.57 42.31
PGSC0003DMT400061535 Potato plastid 49.73 42.2
PGSC0003DMT400028658 Potato nucleus 48.11 41.78
PGSC0003DMT400005378 Potato nucleus 47.03 40.85
PGSC0003DMT400026521 Potato cytosol 41.08 39.79
PGSC0003DMT400075056 Potato plastid 45.95 39.72
PGSC0003DMT400045156 Potato nucleus 45.41 36.36
Os06t0526466-00 Rice cytosol, mitochondrion 23.24 31.16
Protein Annotations
EMBL:DQ235163EnsemblPlants:PGSC0003DMT400023511EnsemblPlantsGene:PGSC0003DMG400009108EntrezGene:102584412Gene3D:3.30.530.20InterPro:IPR023393
InterPro:Polyketide_cyclase/dehydrataseInterPro:START-like_dom_sfPANTHER:PTHR31213PANTHER:PTHR31213:SF12PFAM:PF10604PGSC:PGSC0003DMG400009108
ProteinID:ABB29920ProteinID:ABB29920.1RefSeq:NP_001275025.1SUPFAM:SSF55961UniParc:UPI00005DB2B0UniProt:Q308B1
MapMan:11.1.2.1.1.1:::::
Description
CAPIP1 [Source:PGSC_GENE;Acc:PGSC0003DMG400009108]
Coordinates
chr3:+:48808147..48810927
Molecular Weight (calculated)
20960.0 Da
IEP (calculated)
5.839
GRAVY (calculated)
-0.311
Length
185 amino acids
Sequence
(BLAST)
001: MNANGFCGVE KEYIRKHHLH EPKENQCSSF LVKHIRAPVH LVWSLVRRFD QPQKYKPFIS RCIVQGDLEI GSLREVDVKS GLPATTSTER LELLDDEEHI
101: LSVRIVGGDH RLRNYSSVIS VHPEVIDGRP GTVVLESFVV DVPEGNTKDE TCYFVEALIN CNLKSLADIS ERVAVQDRTE PIDQV
Best Arabidopsis Sequence Match ( AT5G53160.2 )
(BLAST)
001: MEANGIENLT NPNQEREFIR RHHKHELVDN QCSSTLVKHI NAPVHIVWSL VRRFDQPQKY KPFISRCVVK GNMEIGTVRE VDVKSGLPAT RSTERLELLD
101: DNEHILSIRI VGGDHRLKNY SSIISLHPET IEGRIGTLVI ESFVVDVPEG NTKDETCYFV EALIKCNLKS LADISERLAV QDTTESRV
Arabidopsis Description
PYL8RCAR3 [Source:UniProtKB/TrEMBL;Acc:A0A178UJN3]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.