Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cytosol:
29574592
nucleus: 29574592 |
gfp PMID:
29574592
doi
Division of Plant Physiology, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India., ICAR-Central Tuber Crops Research Institute, Thiruvananthapuram, 695017, India., ICAR-National Research Centre on Plant Biotechnology, Indian Agricultural Research Institute, New Delhi, 110012, India., ICAR-National Research Centre on Plant Biotechnology, Indian Agricultural Research Institute, New Delhi, 110012, India. kailashbansal@hotmail.com., TERI-Deakin NanoBiotechnology Centre, The Energy and Resources Institute, New Delhi, 110003, India., TERI-Deakin NanoBiotechnology Centre, The Energy and Resources Institute, New Delhi, 110003, India. kailashbansal@hotmail.com.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0583100-01 | |
| Os05t0537400-00 | |
| Os05t0592800-02 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d016105_P001 | Maize | cytosol | 94.12 | 90.57 |
| EES04864 | Sorghum | cytosol | 93.14 | 90.05 |
| Zm00001d053396_P001 | Maize | cytosol | 91.18 | 85.71 |
| VIT_02s0025g01340.t01 | Wine grape | cytosol | 70.1 | 77.3 |
| GSMUA_Achr10P... | Banana | cytosol | 69.61 | 76.34 |
| VIT_16s0050g02620.t01 | Wine grape | cytosol | 68.63 | 75.68 |
| PGSC0003DMT400012888 | Potato | cytosol | 65.2 | 75.14 |
| KRH65845 | Soybean | cytosol | 69.61 | 73.58 |
| Solyc08g082180.2.1 | Tomato | cytosol | 68.14 | 73.55 |
| PGSC0003DMT400031686 | Potato | cytosol | 68.14 | 73.55 |
| Solyc03g007310.2.1 | Tomato | cytosol | 66.67 | 73.51 |
| Bra003077.1-P | Field mustard | cytosol | 66.18 | 73.37 |
| CDY49462 | Canola | cytosol | 66.18 | 73.37 |
| KRH18155 | Soybean | cytosol | 68.63 | 73.3 |
| GSMUA_Achr10P... | Banana | cytosol | 66.67 | 73.12 |
| KRH47929 | Soybean | cytosol | 66.18 | 72.97 |
| AT5G53160.2 | Thale cress | cytosol, nucleus, peroxisome | 67.16 | 72.87 |
| GSMUA_AchrUn_... | Banana | cytosol | 66.18 | 72.58 |
| PGSC0003DMT400023511 | Potato | cytosol | 65.69 | 72.43 |
| Solyc12g055990.1.1 | Tomato | cytosol | 64.22 | 72.38 |
| CDY61488 | Canola | cytosol | 65.2 | 72.28 |
| GSMUA_Achr2P19970_001 | Banana | cytosol | 65.69 | 72.04 |
| GSMUA_Achr4P08490_001 | Banana | cytosol | 70.1 | 71.86 |
| CDX96197 | Canola | cytosol | 65.69 | 71.28 |
| CDY64350 | Canola | cytosol | 63.73 | 71.04 |
| CDY38728 | Canola | cytosol | 63.73 | 70.65 |
| AT1G01360.1 | Thale cress | cytosol | 64.71 | 70.59 |
| CDY04688 | Canola | cytosol | 64.22 | 70.43 |
| Bra033267.1-P | Field mustard | cytosol | 64.22 | 70.43 |
| Bra022634.1-P | Field mustard | cytosol | 64.71 | 70.21 |
| Bra029093.1-P | Field mustard | cytosol | 63.24 | 70.11 |
| CDY15183 | Canola | cytosol | 64.22 | 70.05 |
| Os05t0213500-01 | Rice | cytosol, nucleus | 71.57 | 69.86 |
| CDX90028 | Canola | cytosol | 64.22 | 69.68 |
| CDY27022 | Canola | cytosol | 64.22 | 69.68 |
| KRH53449 | Soybean | cytosol | 64.71 | 69.11 |
| GSMUA_Achr3P03480_001 | Banana | cytosol | 69.61 | 68.93 |
| Os06t0528300-00 | Rice | cytosol | 69.12 | 68.45 |
| Solyc01g095700.2.1 | Tomato | cytosol | 62.25 | 68.28 |
| CDY25052 | Canola | cytosol | 62.25 | 67.91 |
| PGSC0003DMT400000606 | Potato | cytosol | 61.27 | 67.2 |
| Os06t0527800-01 | Rice | cytosol | 67.65 | 66.99 |
| CDX74368 | Canola | cytosol | 63.24 | 66.84 |
| Bra000938.1-P | Field mustard | cytosol | 63.24 | 66.84 |
| CDX91871 | Canola | cytosol | 62.25 | 65.8 |
| CDY53905 | Canola | cytosol | 59.8 | 65.24 |
| Bra003463.1-P | Field mustard | cytosol | 59.8 | 65.24 |
| AT4G27920.1 | Thale cress | cytosol | 57.84 | 64.48 |
| CDY70517 | Canola | cytosol | 58.33 | 64.32 |
| Bra026299.1-P | Field mustard | cytosol | 57.84 | 64.13 |
| CDX89219 | Canola | cytosol | 57.84 | 63.78 |
| VIT_15s0046g01050.t01 | Wine grape | cytosol | 59.8 | 63.54 |
| Os06t0526400-00 | Rice | cytosol | 60.78 | 63.27 |
| GSMUA_Achr8P19910_001 | Banana | mitochondrion | 64.22 | 62.68 |
| GSMUA_Achr4P15670_001 | Banana | cytosol | 57.35 | 62.57 |
| CDY07165 | Canola | cytosol | 18.14 | 61.67 |
| GSMUA_Achr2P15420_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 67.16 | 60.09 |
| Os02t0255300-00 | Rice | cytosol, plastid | 52.94 | 60.0 |
| KRH06494 | Soybean | cytosol, extracellular, vacuole | 55.88 | 59.69 |
| AT4G01026.1 | Thale cress | cytosol | 60.29 | 58.29 |
| KRH65286 | Soybean | cytosol | 24.02 | 53.85 |
| KRH16733 | Soybean | cytosol | 26.96 | 52.38 |
| Os06t0526466-00 | Rice | cytosol, mitochondrion | 30.88 | 45.65 |
| Os05t0473000-01 | Rice | cytosol | 44.12 | 41.47 |
| Os03t0297600-01 | Rice | cytosol | 44.12 | 39.3 |
| Os10t0573400-01 | Rice | plasma membrane | 39.22 | 37.74 |
| Os06t0562200-01 | Rice | cytosol | 38.24 | 37.68 |
| Os02t0226801-00 | Rice | cytosol | 38.24 | 37.14 |
| Os01t0827800-00 | Rice | plastid | 43.63 | 34.77 |
Protein Annotations
| MapMan:11.1.2.1.1.1 | Gene3D:3.30.530.20 | EntrezGene:4328916 | PDB:5GWO | PDB:5GWP | EMBL:AK059303 |
| EMBL:AK104581 | ProteinID:BAD27946.1 | ProteinID:BAD29693.1 | ProteinID:BAF08378.1 | ProteinID:BAS77948.1 | GO:GO:0003674 |
| GO:GO:0004864 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006464 | GO:GO:0006950 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009409 |
| GO:GO:0009414 | GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009738 | GO:GO:0009791 | GO:GO:0009845 |
| GO:GO:0009987 | GO:GO:0010427 | GO:GO:0019538 | GO:GO:0030234 | GO:GO:1905183 | InterPro:IPR023393 |
| EMBL:JX970837 | EnsemblPlantsGene:Os02g0255500 | EnsemblPlants:Os02t0255500-01 | PFAM:PF10604 | PANTHER:PTHR31213 | PANTHER:PTHR31213:SF16 |
| InterPro:Polyketide_cyclase/dehydratase | UniProt:Q6EN42 | SUPFAM:SSF55961 | InterPro:START-like_dom_sf | UniParc:UPI00003CE56F | RefSeq:XP_015627042.1 |
| SEG:seg | : | : | : | : | : |
Description
PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 3, pyrabactin resistance-like 3Similar to Extensin (Fragment). (Os02t0255500-01)
Coordinates
chr2:+:8801325..8805273
Molecular Weight (calculated)
23069.5 Da
IEP (calculated)
6.943
GRAVY (calculated)
-0.398
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MVEVGGGAAE AAAGRRWRLA DERCDLRAAE TEYVRRFHRH EPRDHQCSSA VAKHIKAPVH LVWSLVRRFD QPQLFKPFVS RCEMKGNIEI GSVREVNVKS
101: GLPATRSTER LELLDDNEHI LSVRFVGGDH RLKNYSSILT VHPEVIDGRP GTLVIESFVV DVPEGNTKDE TCYFVEALLK CNLKSLAEVS ERLVVKDQTE
201: PLDR
101: GLPATRSTER LELLDDNEHI LSVRFVGGDH RLKNYSSILT VHPEVIDGRP GTLVIESFVV DVPEGNTKDE TCYFVEALLK CNLKSLAEVS ERLVVKDQTE
201: PLDR
001: MEANGIENLT NPNQEREFIR RHHKHELVDN QCSSTLVKHI NAPVHIVWSL VRRFDQPQKY KPFISRCVVK GNMEIGTVRE VDVKSGLPAT RSTERLELLD
101: DNEHILSIRI VGGDHRLKNY SSIISLHPET IEGRIGTLVI ESFVVDVPEG NTKDETCYFV EALIKCNLKS LADISERLAV QDTTESRV
101: DNEHILSIRI VGGDHRLKNY SSIISLHPET IEGRIGTLVI ESFVVDVPEG NTKDETCYFV EALIKCNLKS LADISERLAV QDTTESRV
Arabidopsis Description
PYL8RCAR3 [Source:UniProtKB/TrEMBL;Acc:A0A178UJN3]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.