Factsheet for VIT_02s0025g01340.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_09s0002g01850.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01360.1	VIT_09s0002g01850.t01	AT1G72770.1	19407142
AT1G01360.1	VIT_09s0002g01850.t01	AT1G72770.1	19407143
AT4G01026.1	VIT_09s0002g01850.t01	AT1G72770.1	19407142

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012888	Potato	cytosol	83.24	87.01
PGSC0003DMT400031686	Potato	cytosol	85.95	84.13
Solyc08g082180.2.1	Tomato	cytosol	85.95	84.13
Solyc12g055990.1.1	Tomato	cytosol	82.16	83.98
VIT_16s0050g02620.t01	Wine grape	cytosol	83.24	83.24
KRH47929	Soybean	cytosol	80.54	80.54
GSMUA_Achr10P...	Banana	cytosol	80.0	79.57
AT1G01360.1	Thale cress	cytosol	77.84	77.01
GSMUA_AchrUn_...	Banana	cytosol	76.76	76.34
CDY04688	Canola	cytosol	76.22	75.81
HORVU0Hr1G032390.2	Barley	cytosol, extracellular	35.14	75.58
CDY15183	Canola	cytosol	76.22	75.4
Bra033267.1-P	Field mustard	cytosol	75.68	75.27
GSMUA_Achr2P19970_001	Banana	cytosol	75.68	75.27
GSMUA_Achr10P...	Banana	cytosol	75.68	75.27
CDX90028	Canola	cytosol	75.68	74.47
CDY25052	Canola	cytosol	74.05	73.26
CDX74368	Canola	cytosol	75.14	72.02
Bra000938.1-P	Field mustard	cytosol	74.59	71.5
VIT_15s0046g01050.t01	Wine grape	cytosol	73.51	70.83
Bra003463.1-P	Field mustard	cytosol	71.35	70.59
CDY53905	Canola	cytosol	71.35	70.59
CDX91871	Canola	cytosol	73.51	70.47
Os02t0255500-01	Rice	cytosol	77.3	70.1
GSMUA_Achr3P03480_001	Banana	cytosol	76.76	68.93
Os05t0213500-01	Rice	cytosol, nucleus	77.84	68.9
EES17886	Sorghum	cytosol	72.97	68.53
TraesCS1D01G126900.1	Wheat	cytosol	75.68	68.29
TraesCS1A01G126800.1	Wheat	cytosol	75.68	68.29
EES04864	Sorghum	cytosol	77.84	68.25
Zm00001d037719_P001	Maize	cytosol	72.43	68.02
Zm00001d016105_P001	Maize	cytosol	77.84	67.92
TraesCS1B01G145800.1	Wheat	cytosol	75.14	67.8
KRH06494	Soybean	cytosol, extracellular, vacuole	69.73	67.54
CDY07165	Canola	cytosol	21.62	66.67
Zm00001d010445_P001	Maize	cytosol	70.81	66.5
Zm00001d053396_P001	Maize	cytosol	76.76	65.44
GSMUA_Achr8P19910_001	Banana	mitochondrion	72.97	64.59
AT4G01026.1	Thale cress	cytosol	72.43	63.51
GSMUA_Achr2P15420_001	Banana	cytosol, mitochondrion, nucleus, plastid	77.84	63.16
Os02t0255300-00	Rice	cytosol, plastid	55.68	57.22
Zm00001d002533_P001	Maize	cytosol	38.92	57.14
Os06t0527800-01	Rice	cytosol	60.0	53.88
Os06t0528300-00	Rice	cytosol	60.0	53.88
TraesCS7B01G232100.1	Wheat	cytoskeleton, cytosol, nucleus	56.22	53.33
HORVU7Hr1G079270.1	Barley	cytosol	56.22	52.79
TraesCS7D01G328000.1	Wheat	cytosol	55.68	52.28
Os06t0526400-00	Rice	cytosol	54.05	51.02
TraesCS7A01G350800.1	Wheat	cytosol	54.05	50.76
HORVU1Hr1G030390.2	Barley	extracellular, mitochondrion, plasma membrane	75.68	48.11
VIT_04s0008g00890.t01	Wine grape	cytosol	44.32	44.32
HORVU3Hr1G054230.1	Barley	mitochondrion	37.84	44.03
VIT_13s0067g01940.t01	Wine grape	plastid	47.03	41.04
VIT_08s0058g00470.t01	Wine grape	plastid	48.11	39.21
Os06t0526466-00	Rice	cytosol, mitochondrion	23.78	31.88
VIT_02s0012g01270.t01	Wine grape	cytosol	44.32	31.06
VIT_04s0008g00270.t01	Wine grape	cytosol	28.11	17.93
VIT_08s0058g00230.t01	Wine grape	plastid	25.95	14.91
VIT_13s0175g00110.t01	Wine grape	plastid	6.49	11.32

Protein Annotations

ArrayExpress:VIT_02s0025g01340	EMBL:FN596251	EnsemblPlants:VIT_02s0025g01340.t01	EnsemblPlantsGene:VIT_02s0025g01340	Gene3D:3.30.530.20	InterPro:IPR023393
InterPro:Polyketide_cyclase/dehydratase	InterPro:START-like_dom_sf	PANTHER:PTHR31213	PANTHER:PTHR31213:SF4	PFAM:PF10604	ProteinID:CBI34472
ProteinID:CBI34472.3	SEG:seg	SUPFAM:SSF55961	TIGR:TC60251	unigene:Vvi.25443	UniParc:UPI00015CCBDA
UniProt:D7TVE7	MapMan:11.1.2.1.1.1	:	:	:	:

Description

No Description!

Coordinates

chr2:-:1261182..1263747

Molecular Weight (calculated)

21063.2 Da

IEP (calculated)

6.304

GRAVY (calculated)

-0.362

Length

185 amino acids

Sequence
(BLAST)

001: MSGYGCIKME DEYIRRHHRH EIRDNQCSSS LVKHIKAPVH LVWSLVRSFD QPQKYKPFVS RCIVQGDLEI GSVREVNVKS GLPATTSTER LELLDDEEHI
101: FGMRIVGGDH RLKNYSSIVT VHPEIIDGRP GTLVIESFVV DVPDGNTKDE TCYFVEALIK CNLKSLADVS ERLAIQDRTE PIDRM

Best Arabidopsis Sequence Match ( AT5G53160.2 )
(BLAST)

001: MEANGIENLT NPNQEREFIR RHHKHELVDN QCSSTLVKHI NAPVHIVWSL VRRFDQPQKY KPFISRCVVK GNMEIGTVRE VDVKSGLPAT RSTERLELLD
101: DNEHILSIRI VGGDHRLKNY SSIISLHPET IEGRIGTLVI ESFVVDVPEG NTKDETCYFV EALIKCNLKS LADISERLAV QDTTESRV

Arabidopsis Description

PYL8RCAR3 [Source:UniProtKB/TrEMBL;Acc:A0A178UJN3]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.