Factsheet for VIT_08s0058g00230.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
mitochondrion 3
peroxisome 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	peroxisome
Plant-mPloc:	mitochondrion, nucleus, plastid
Predotar:	plastid
PProwler:	secretory
PTS1:	peroxisome
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g01270.t01
VIT_04s0008g00270.t01
VIT_06s0004g05460.t01
VIT_07s0197g00080.t01
VIT_08s0058g00230.t01
VIT_09s0002g01850.t01
VIT_13s0019g02200.t01
VIT_13s0175g00110.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17870.1	VIT_09s0002g01850.t01	AT1G72770.1	19407142
AT4G17870.1	VIT_09s0002g01850.t01	AT1G72770.1	19624469
AT4G17870.1	VIT_09s0002g01850.t01	AT1G72770.1	21847091
AT4G17870.1	VIT_13s0019g02200.t01	AT3G11410.1	19407142
AT4G17870.1	VIT_02s0012g01270.t01	AT4G17870.1	21847091
AT4G17870.1	VIT_04s0008g00270.t01	AT4G17870.1	21847091
AT4G17870.1	VIT_08s0058g00230.t01	AT4G17870.1	21847091
AT4G17870.1	VIT_13s0175g00110.t01	AT4G17870.1	21847091
AT4G17870.1	VIT_06s0004g05460.t01	AT5G59220.1	19407142
AT4G17870.1	VIT_07s0197g00080.t01	AT5G66880.1	19874541
AT5G46790.1	VIT_09s0002g01850.t01	AT1G72770.1	19407142
AT5G46790.1	VIT_09s0002g01850.t01	AT1G72770.1	21847091
AT5G46790.1	VIT_13s0019g02200.t01	AT3G11410.1	19407142
AT5G46790.1	VIT_02s0012g01270.t01	AT5G46790.1	21847091
AT5G46790.1	VIT_04s0008g00270.t01	AT5G46790.1	21847091
AT5G46790.1	VIT_08s0058g00230.t01	AT5G46790.1	21847091
AT5G46790.1	VIT_13s0175g00110.t01	AT5G46790.1	21847091

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0175g00110.t01	Wine grape	plastid	25.78	78.3
VIT_04s0008g00270.t01	Wine grape	cytosol	40.99	45.52
Bra012635.1-P	Field mustard	cytosol	21.74	36.65
CDY01498	Canola	cytosol	21.74	36.65
CDX90440	Canola	cytosol	21.74	36.65
CDY08877	Canola	cytosol	17.08	35.48
AT4G17870.1	Thale cress	cytosol	20.81	35.08
CDY69797	Canola	cytosol	20.81	35.08
CDY70860	Canola	cytosol	20.19	34.95
CDX76554	Canola	cytosol	16.77	34.84
Bra013262.1-P	Field mustard	cytosol	20.5	34.55
Bra021032.1-P	Field mustard	cytosol	16.77	34.39
Solyc06g061180.1.1	Tomato	nucleus	21.12	31.92
PGSC0003DMT400005378	Potato	nucleus	20.81	31.46
Bra024995.1-P	Field mustard	nucleus	19.88	30.48
CDY58505	Canola	nucleus	19.88	30.48
GSMUA_Achr4P19170_001	Banana	cytosol	18.32	30.41
KRH75621	Soybean	cytosol	20.19	30.37
CDX77691	Canola	nucleus	19.88	29.77
KRH45453	Soybean	cytosol	19.57	29.72
VIT_02s0012g01270.t01	Wine grape	cytosol	24.22	29.55
Zm00001d047037_P001	Maize	cytosol	18.32	28.78
VIT_13s0067g01940.t01	Wine grape	plastid	18.94	28.77
VIT_08s0058g00470.t01	Wine grape	plastid	20.19	28.63
TraesCS1A01G191700.1	Wheat	cytosol	18.63	28.44
Os10t0573400-01	Rice	plasma membrane	18.63	28.3
TraesCS1B01G206600.1	Wheat	cytosol, unclear	18.63	28.17
TraesCS1D01G195300.1	Wheat	cytosol	18.63	28.17
GSMUA_Achr8P14780_001	Banana	cytosol	18.01	28.16
CDY68316	Canola	nucleus	16.46	27.75
VIT_04s0008g00890.t01	Wine grape	cytosol	15.84	27.57
Zm00001d030045_P001	Maize	cytosol	18.01	27.36
OQU92088	Sorghum	cytosol	18.01	27.36
CDY03194	Canola	nucleus	16.15	27.23
AT5G46790.1	Thale cress	nucleus	18.63	27.15
VIT_16s0050g02620.t01	Wine grape	cytosol	15.22	26.49
Bra017526.1-P	Field mustard	nucleus	14.91	26.23
VIT_02s0025g01340.t01	Wine grape	cytosol	14.91	25.95
VIT_15s0046g01050.t01	Wine grape	cytosol	14.6	24.48
HORVU1Hr1G050110.1	Barley	plastid	18.32	21.53

Protein Annotations

ArrayExpress:VIT_08s0058g00230	EMBL:AM483670	EMBL:FN594967	EnsemblPlants:VIT_08s0058g00230.t01	EnsemblPlantsGene:VIT_08s0058g00230	Gene3D:3.30.530.20
InterPro:DUF936_pln	InterPro:IPR023393	InterPro:START-like_dom_sf	PANTHER:PTHR31213	PANTHER:PTHR31213:SF6	PFAM:PF06075
ProteinID:CAN79723	ProteinID:CAN79723.1	ProteinID:CCB44829	ProteinID:CCB44829.1	SEG:seg	SUPFAM:SSF55961
UniParc:UPI000210A913	UniProt:F6GXU9	MapMan:11.1.2.1.1.1	:	:	:

Description

No Description!

Coordinates

chr8:-:9018510..9019871

Molecular Weight (calculated)

34412.5 Da

IEP (calculated)

9.464

GRAVY (calculated)

-0.103

Length

322 amino acids

Sequence
(BLAST)

001: MGTKFSCNVP FSRPCVASSM GIITKFAMVV ALATVDDVGT IHSSNSAVPS ASGGDPVHSS SAKYFFCSLP VQRVHVPLFN VCSVVHRFGK PQTCKHVTKS
101: CHMEGGFEMR MGCLRDVNVI SGLPAAISAG RLDIQDDERH MTRSAFPTWQ DVLAADSKSI ESAIRRGSLA VAEGSVVATA SVCSTLGLAP AQSQKTLAGN
201: QPMLVLKNSI KNASAKTQAK PRQTVGSKLA APGTSRRLED GPTANQKPRP LPPTEWIRRT GLGEAIDLGE MLRMESQDWF LGFVERISDA DVDISASSDH
301: GLIAAGTIDR PRKKIMGIFS RM

Best Arabidopsis Sequence Match ( AT4G17870.1 )
(BLAST)

001: MPSELTPEER SELKNSIAEF HTYQLDPGSC SSLHAQRIHA PPELVWSIVR RFDKPQTYKH FIKSCSVEQN FEMRVGCTRD VIVISGLPAN TSTERLDILD
101: DERRVTGFSI IGGEHRLTNY KSVTTVHRFE KENRIWTVVL ESYVVDMPEG NSEDDTRMFA DTVVKLNLQK LATVAEAMAR NSGDGSGSQV T

Arabidopsis Description

PYR1Abscisic acid receptor PYR1 [Source:UniProtKB/Swiss-Prot;Acc:O49686]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.