Factsheet for VIT_09s0002g01850.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g01270.t01
VIT_02s0025g01340.t01
VIT_04s0008g00270.t01
VIT_04s0008g00890.t01
VIT_04s0023g02480.t01
VIT_08s0058g00230.t01
VIT_08s0058g00470.t01
VIT_12s0028g00830.t01
VIT_13s0067g01940.t01
VIT_13s0175g00110.t01
VIT_16s0050g02620.t01
VIT_18s0122g00670.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72770.1	VIT_02s0025g01340.t01	AT1G01360.1	19407142
AT1G72770.1	VIT_02s0025g01340.t01	AT1G01360.1	19407143
AT1G72770.1	VIT_04s0008g00890.t01	AT2G26040.1	19407142
AT1G72770.1	VIT_12s0028g00830.t01	AT2G30880.1	21798944
AT1G72770.1	VIT_18s0122g00670.t01	AT2G33610.1	19033529
AT1G72770.1	VIT_08s0058g00470.t01	AT2G38310.1	19407142
AT1G72770.1	VIT_13s0067g01940.t01	AT2G38310.1	19407142
AT1G72770.1	VIT_08s0058g00470.t01	AT2G38310.1	19624469
AT1G72770.1	VIT_13s0067g01940.t01	AT2G38310.1	19624469
AT1G72770.1	VIT_02s0025g01340.t01	AT4G01026.1	19407142
AT1G72770.1	VIT_02s0012g01270.t01	AT4G17870.1	19407142
AT1G72770.1	VIT_04s0008g00270.t01	AT4G17870.1	19407142
AT1G72770.1	VIT_08s0058g00230.t01	AT4G17870.1	19407142
AT1G72770.1	VIT_13s0175g00110.t01	AT4G17870.1	19407142
AT1G72770.1	VIT_02s0012g01270.t01	AT4G17870.1	19624469
AT1G72770.1	VIT_04s0008g00270.t01	AT4G17870.1	19624469
AT1G72770.1	VIT_08s0058g00230.t01	AT4G17870.1	19624469
AT1G72770.1	VIT_13s0175g00110.t01	AT4G17870.1	19624469
AT1G72770.1	VIT_02s0012g01270.t01	AT4G17870.1	21847091
AT1G72770.1	VIT_04s0008g00270.t01	AT4G17870.1	21847091
AT1G72770.1	VIT_08s0058g00230.t01	AT4G17870.1	21847091
AT1G72770.1	VIT_13s0175g00110.t01	AT4G17870.1	21847091
AT1G72770.1	VIT_16s0050g02620.t01	AT4G27920.1	19407142
AT1G72770.1	VIT_02s0012g01270.t01	AT5G46790.1	19407142
AT1G72770.1	VIT_04s0008g00270.t01	AT5G46790.1	19407142
AT1G72770.1	VIT_08s0058g00230.t01	AT5G46790.1	19407142
AT1G72770.1	VIT_13s0175g00110.t01	AT5G46790.1	19407142
AT1G72770.1	VIT_04s0023g02480.t01	AT5G66400.1	19033529

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96761	Canola	cytosol	41.61	65.14
GSMUA_Achr7P24000_001	Banana	cytosol	46.53	65.05
CDX83901	Canola	cytosol	40.69	63.71
CDX72943	Canola	cytosol, peroxisome, plastid	55.11	63.58
HORVU7Hr1G029040.1	Barley	cytosol, peroxisome	33.94	63.48
PGSC0003DMT400006608	Potato	plastid	62.96	63.3
Bra016595.1-P	Field mustard	cytosol	47.08	62.93
Bra016034.1-P	Field mustard	cytosol, peroxisome, plastid	54.93	62.19
CDX96432	Canola	cytosol, peroxisome, plastid	54.93	62.19
VIT_04s0008g01420.t01	Wine grape	cytosol	61.5	61.16
Os01t0583100-01	Rice	cytosol	42.88	59.34
AT1G72770.1	Thale cress	cytosol	55.29	59.3
HORVU3Hr1G067380.4	Barley	cytosol	35.58	57.86
CDY26234	Canola	cytosol	52.37	57.86
Bra025964.1-P	Field mustard	cytosol	52.74	56.89
CDY48313	Canola	cytosol	51.64	56.49
AT1G17550.1	Thale cress	cytosol	52.19	55.97
GSMUA_Achr8P05700_001	Banana	cytosol, peroxisome, plasma membrane	44.53	55.96
HORVU3Hr1G067360.1	Barley	cytosol, peroxisome	5.11	54.9
TraesCS1D01G449700.1	Wheat	cytosol	40.69	54.39
Zm00001d011202_P002	Maize	cytosol, peroxisome, plastid	43.43	54.34
Zm00001d038846_P001	Maize	cytosol, nucleus	36.5	54.05
TraesCS1A01G441200.1	Wheat	cytosol	40.51	53.88
TraesCS1A01G358600.1	Wheat	cytosol	37.04	53.42
TraesCS3D01G249000.1	Wheat	cytosol	36.86	53.3
Zm00001d009747_P001	Maize	cytosol	41.06	53.19
KXG22422	Sorghum	cytosol, nucleus, plastid	36.86	53.16
TraesCS1B01G375100.1	Wheat	cytosol	36.86	53.02
OQU87413	Sorghum	cytosol	37.04	53.0
HORVU1Hr1G094840.9	Barley	extracellular, mitochondrion	40.33	52.87
HORVU1Hr1G080290.6	Barley	cytosol	37.04	52.86
TraesCS1D01G363500.1	Wheat	cytosol	36.68	52.62
HORVU3Hr1G050340.1	Barley	plasma membrane, vacuole	45.62	52.41
Zm00001d011132_P001	Maize	cytosol, nucleus	14.23	52.35
TraesCS3A01G249000.1	Wheat	cytosol	36.86	52.33
TraesCS3D01G212100.1	Wheat	peroxisome, plasma membrane, vacuole	45.44	52.31
Zm00001d039163_P002	Maize	cytosol	40.88	52.21
TraesCS3B01G240000.1	Wheat	peroxisome, plasma membrane, vacuole	45.62	52.19
KXG22681	Sorghum	cytosol	40.69	52.1
TraesCS3A01G209200.1	Wheat	peroxisome, plasma membrane, vacuole	45.26	51.77
EES00964	Sorghum	peroxisome, plasma membrane, vacuole	45.44	51.66
VIT_11s0016g01780.t01	Wine grape	plastid	49.09	51.43
Os05t0592800-02	Rice	endoplasmic reticulum, vacuole	41.24	50.79
Zm00001d044301_P001	Maize	cytosol, nucleus	44.71	50.62
TraesCS1B01G475700.1	Wheat	cytosol	40.69	50.11
GSMUA_Achr3P26270_001	Banana	cytosol, peroxisome, plastid	44.53	49.19
TraesCS3B01G277900.1	Wheat	cytosol	37.41	49.16
Os05t0537400-00	Rice	cytosol	25.18	46.62
Zm00001d011131_P001	Maize	cytosol	23.36	45.39
Solyc08g062650.2.1	Tomato	extracellular	37.04	43.28
VIT_11s0016g03180.t01	Wine grape	nucleus	28.83	39.9
VIT_16s0022g02210.t01	Wine grape	nucleus	26.09	38.24
VIT_06s0004g05460.t01	Wine grape	nucleus	27.37	38.17
VIT_13s0019g02200.t01	Wine grape	plastid	27.55	37.75
TraesCS7A01G047900.1	Wheat	cytosol, mitochondrion, peroxisome	7.48	36.94
VIT_16s0050g02680.t01	Wine grape	nucleus	19.71	36.61
VIT_09s0002g03530.t01	Wine grape	nucleus	24.45	36.02
VIT_02s0025g01390.t01	Wine grape	cytosol, nucleus, plastid	25.36	35.37
VIT_09s0002g03600.t01	Wine grape	nucleus	22.81	34.63
VIT_02s0025g01550.t01	Wine grape	cytosol, nucleus, peroxisome	20.8	34.44
VIT_00s0179g00110.t01	Wine grape	vacuole	17.88	26.85
VIT_00s0179g00140.t01	Wine grape	vacuole	16.61	19.2

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100241147	wikigene:100241147	MapMan:11.1.2.1.1.2	MapMan:18.4.24.2.1
Gene3D:3.60.40.10	ProteinID:CCB59324	ProteinID:CCB59324.1	UniProt:F6HY01	EMBL:FN596494	GO:GO:0003674
GO:GO:0003824	GO:GO:0004721	GO:GO:0004722	GO:GO:0005488	GO:GO:0006464	GO:GO:0006470
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0043169
GO:GO:0046872	InterPro:IPR001932	InterPro:IPR036457	EntrezGene:LOC100241147	wikigene:LOC100241147	PFAM:PF00481
InterPro:PP2C	InterPro:PP2C_BS	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	ScanProsite:PS01032	PFscan:PS51746
PANTHER:PTHR13832	PANTHER:PTHR13832:SF516	SMART:SM00332	SUPFAM:SSF81606	UniParc:UPI0002109F9C	ArrayExpress:VIT_09s0002g01850
EnsemblPlantsGene:VIT_09s0002g01850	EnsemblPlants:VIT_09s0002g01850.t01	RefSeq:XP_002278167	RefSeq:XP_002278167.2	RefSeq:XP_010654501.1	:

Description

No Description!

Coordinates

chr9:+:1638319..1641659

Molecular Weight (calculated)

59164.2 Da

IEP (calculated)

4.551

GRAVY (calculated)

-0.122

Length

548 amino acids

Sequence
(BLAST)

001: MEEMSPAVSV TLSLGSTLCD NSGIATHVEI TQLKLVTDTV SLLSSPATVL SSESVCSGDG IRNDVKSEPN GVSESEAEED SGGRRVTLLE MVPEKGNGWI
101: DSGDMIQHSE EDEILAVVDN TSRISHEDLL ALVAGSEISL PNSMEIENVE HGQIVAKAII LRESSEKVPA GELLAVAVNP DAVLSGGSDL KASAVVFQLS
201: TDKNLSKGSV RSVFELDCIP LWGSVSIQGQ RPEMEDAVAA VPRFMETPIK MLIGNRAIDG MSQRFTHLTT HFFGVYDGHG GSQVANYCRD RIHLALAEEI
301: GSIKDDVEDN RHGLWENAFT SCFQKVDDEI GGEVSRGIIE GNADVSDVSD ASLEPIAPET VGSTAVVALI CSSHIIIANC GDSRAVLCRG KEPIALSIDH
401: RPNREDEYAR IEASGGKVIQ WNGHRVFGVL AMSRSIGDRY LKPWIIPEPE VMMVPRARED DCLILASDGL WDVMTNEEVC EVARRRILLW HKKNGVASLV
501: ERGKGIDPAA QAAAEYLSML AIQKGSKDNI SVIVVDLKAQ RKFKSKPS

Best Arabidopsis Sequence Match ( AT1G72770.3 )
(BLAST)

001: MEEMTPAVAM TLSLAANTMC ESSPVEITQL KNVTDAADLL SDSENQSFCN GGTECTMEDV SELEEVGEQD LLKTLSDTRS GSSNVFDEDD VLSVVEDNSA
101: VISEGLLVVD AGSELSLSNT AMEIDNGRVL ATAIIVGESS IEQVPTAEVL IAGVNQDTNT SEVVIRLPDE NSNHLVKGRS VYELDCIPLW GTVSIQGNRS
201: EMEDAFAVSP HFLKLPIKML MGDHEGMSPS LTHLTGHFFG VYDGHGGHKV ADYCRDRLHF ALAEEIERIK DELCKRNTGE GRQVQWDKVF TSCFLTVDGE
301: IEGKIGRAVV GSSDKVLEAV ASETVGSTAV VALVCSSHIV VSNCGDSRAV LFRGKEAMPL SVDHKPDRED EYARIENAGG KVIQWQGARV FGVLAMSRSI
401: GDRYLKPYVI PEPEVTFMPR SREDECLILA SDGLWDVMNN QEVCEIARRR ILMWHKKNGA PPLAERGKGI DPACQAAADY LSMLALQKGS KDNISIIVID
501: LKAQRKFKTR T

Arabidopsis Description

HAB1Protein phosphatase 2C 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAJ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.