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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, vacuole, plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • plastid 2
  • peroxisome 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 2
  • plasma membrane 2
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:peroxisome, plasma membrane, vacuole
Any Predictor:cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:nucleus
EpiLoc:cytosol
iPSORT:plastid
MultiLoc:peroxisome
Plant-mPloc:plastid
PProwler:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
EER88529
EER92405
EES04686
EES04864
EES06532
EES17886
EES19683
KXG33203
KXG34371
KXG37877
OQU87775
OQU92088

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G72770.1 EES04864 AT1G01360.1 19407142
AT1G72770.1 EES17886 AT1G01360.1 19407142
AT1G72770.1 EES04864 AT1G01360.1 19407143
AT1G72770.1 EES17886 AT1G01360.1 19407143
AT1G72770.1 EER88529 AT1G73000.1 19407142
AT1G72770.1 EES06532 AT1G73000.1 19407142
AT1G72770.1 EER88529 AT2G26040.1 19407142
AT1G72770.1 EES06532 AT2G26040.1 19407142
AT1G72770.1 KXG34371 AT2G30880.1 21798944
AT1G72770.1 KXG37877 AT2G30880.1 21798944
AT1G72770.1 EES04686 AT2G33610.1 19033529
AT1G72770.1 EER92405 AT2G38310.1 19407142
AT1G72770.1 EES19683 AT2G38310.1 19407142
AT1G72770.1 OQU87775 AT2G38310.1 19407142
AT1G72770.1 EER92405 AT2G38310.1 19624469
AT1G72770.1 EES19683 AT2G38310.1 19624469
AT1G72770.1 OQU87775 AT2G38310.1 19624469
AT1G72770.1 EER92405 AT2G40330.1 19407142
AT1G72770.1 EES19683 AT2G40330.1 19407142
AT1G72770.1 OQU87775 AT2G40330.1 19407142
AT1G72770.1 EER92405 AT2G40330.1 19624469
AT1G72770.1 EES19683 AT2G40330.1 19624469
AT1G72770.1 OQU87775 AT2G40330.1 19624469
AT1G72770.1 EER92405 AT2G40330.1 21847091
AT1G72770.1 EES19683 AT2G40330.1 21847091
AT1G72770.1 OQU87775 AT2G40330.1 21847091
AT1G72770.1 EES04864 AT4G01026.1 19407142
AT1G72770.1 EES17886 AT4G01026.1 19407142
AT1G72770.1 OQU92088 AT4G17870.1 19407142
AT1G72770.1 OQU92088 AT4G17870.1 19624469
AT1G72770.1 OQU92088 AT4G17870.1 21847091
AT1G72770.1 EES04864 AT4G27920.1 19407142
AT1G72770.1 EES17886 AT4G27920.1 19407142
AT1G72770.1 EER92405 AT5G05440.1 19407142
AT1G72770.1 EES19683 AT5G05440.1 19407142
AT1G72770.1 OQU87775 AT5G05440.1 19407142
AT1G72770.1 EER92405 AT5G05440.1 19624469
AT1G72770.1 EES19683 AT5G05440.1 19624469
AT1G72770.1 OQU87775 AT5G05440.1 19624469
AT1G72770.1 EER92405 AT5G05440.1 21847091
AT1G72770.1 EES19683 AT5G05440.1 21847091
AT1G72770.1 OQU87775 AT5G05440.1 21847091
AT1G72770.1 OQU92088 AT5G46790.1 19407142
AT1G72770.1 KXG33203 AT5G66400.1 19033529
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d011202_P002 Maize cytosol, peroxisome, plastid 84.44 92.92
Zm00001d044301_P001 Maize cytosol, nucleus 92.53 92.15
Os01t0583100-01 Rice cytosol 70.75 86.11
TraesCS3B01G240000.1 Wheat peroxisome, plasma membrane, vacuole 81.74 82.25
HORVU3Hr1G050340.1 Barley plasma membrane, vacuole 81.33 82.18
TraesCS3D01G212100.1 Wheat peroxisome, plasma membrane, vacuole 81.12 82.14
TraesCS3A01G209200.1 Wheat peroxisome, plasma membrane, vacuole 81.33 81.84
PGSC0003DMT400021210 Potato cytosol, nucleus, peroxisome 13.69 73.33
HORVU7Hr1G029040.1 Barley cytosol, peroxisome 44.4 73.04
Solyc08g062640.2.1 Tomato cytosol 19.5 70.15
KXG22681 Sorghum cytosol 60.79 68.46
GSMUA_Achr7P24000_001 Banana cytosol 53.32 65.56
GSMUA_Achr8P05700_001 Banana cytosol, peroxisome, plasma membrane 56.22 62.16
CDX96761 Canola cytosol 40.87 56.29
CDX83901 Canola cytosol 40.66 56.0
KXG22422 Sorghum cytosol, nucleus, plastid 43.98 55.79
Bra016595.1-P Field mustard cytosol 46.68 54.88
GSMUA_Achr3P26270_001 Banana cytosol, peroxisome, plastid 56.22 54.64
OQU87413 Sorghum cytosol 41.29 51.96
CDX72943 Canola cytosol, peroxisome, plastid 48.34 49.05
Solyc12g096020.1.1 Tomato cytosol, nucleus, plastid 51.66 49.02
VIT_04s0008g01420.t01 Wine grape cytosol 55.81 48.82
CDX96432 Canola cytosol, peroxisome, plastid 48.76 48.55
Bra016034.1-P Field mustard cytosol, peroxisome, plastid 48.76 48.55
KRH52222 Soybean cytosol 53.94 47.79
KRH61549 Soybean cytosol 53.94 47.79
PGSC0003DMT400075333 Potato cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole 53.11 47.76
CDY26234 Canola cytosol 48.13 46.77
KXG35986 Sorghum cytosol, peroxisome, plastid 19.5 46.31
AT1G72770.1 Thale cress cytosol 48.96 46.18
AT1G17550.1 Thale cress cytosol 48.96 46.18
KRH05300 Soybean cytosol 53.32 46.06
Bra025964.1-P Field mustard cytosol 48.34 45.87
KRH15739 Soybean cytosol 52.9 45.78
PGSC0003DMT400006608 Potato plastid 51.66 45.69
VIT_09s0002g01850.t01 Wine grape cytosol, peroxisome, plastid 51.66 45.44
CDY48313 Canola cytosol 47.1 45.31
EER96576 Sorghum cytosol 30.91 41.74
OQU78453 Sorghum nucleus 33.4 40.76
Solyc08g062650.2.1 Tomato extracellular 36.93 37.95
EES01744 Sorghum plastid 30.91 36.16
EER92493 Sorghum nucleus 29.05 34.91
KXG33023 Sorghum nucleus 31.95 32.49
KXG22152 Sorghum nucleus 29.67 30.82
EES11811 Sorghum plastid 29.88 29.45
OQU90183 Sorghum mitochondrion 12.66 21.48
OQU86100 Sorghum nucleus 13.9 16.79
KXG28797 Sorghum golgi, plasma membrane, vacuole 20.54 9.28
Protein Annotations
KEGG:04658+3.1.3.16KEGG:04660+3.1.3.16MapMan:11.1.2.1.1.2MapMan:18.4.24.2.1Gene3D:3.60.40.10EntrezGene:8078643
UniProt:C5XNV3EnsemblPlants:EES00964ProteinID:EES00964ProteinID:EES00964.1GO:GO:0003674GO:GO:0003824
GO:GO:0004721GO:GO:0004722GO:GO:0005488GO:GO:0006464GO:GO:0006470GO:GO:0008150
GO:GO:0008152GO:GO:0009987GO:GO:0016787GO:GO:0019538GO:GO:0043169GO:GO:0046872
InterPro:IPR001932InterPro:IPR036457PFAM:PF00481InterPro:PP2CInterPro:PP2C_BSInterPro:PPM-type_dom_sf
InterPro:PPM-type_phosphatase_domScanProsite:PS01032PFscan:PS51746PANTHER:PTHR13832PANTHER:PTHR13832:SF374SMART:SM00331
SMART:SM00332EnsemblPlantsGene:SORBI_3003G198200SUPFAM:SSF81606unigene:Sbi.6973UniParc:UPI0001A848FDRefSeq:XP_002455844.1
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr3:+:52416897..52421399
Molecular Weight (calculated)
50399.9 Da
IEP (calculated)
4.597
GRAVY (calculated)
0.092
Length
482 amino acids
Sequence
(BLAST)
001: MEDVVAVVAP LPAPPAPTFS PAAAGLTLIA AAAADPIAAA VVGAMEGVSV PVTVPPVRTA SAVDDDALPP EGEGEGGDAS VAGSPCSVAS DCSSVASADF
101: EGVGLGFFGA EGGPMVFEDS AASAATVEAE ARVAAGGRSV FAVDCVPLWG YTSICGRRPE MEDAVAIVPR FFDVPLWMLT GNAVVDGLDP MTFRLPAHFF
201: GVYDGHGGAQ VANYCRERLH VALLEQLSRI EENVCAANLV DMEFKKQWEK AFVDSFARVD DEVGGKAIRG GGGEAGTSNA AVALAPEPVA PETVGSTAVV
301: AVICSSHIIV SNCGDSRAVL YRGKQPVPLS VDHKPNREDE YARIEAEGGK VIQWNGYRVF GVLAMSRSIG DRYLKPWIIP VPEVTIVPRA KEDECLILAS
401: DGLWDVMSNE EVCEVARKRI LLWHKKNGTS SSSAPRVGDS ADPAAQAAAE CLSKLAVQKG SKDNITVVVV DLKAHRKFKS KT
Best Arabidopsis Sequence Match ( AT1G17550.1 )
(BLAST)
001: MEEISPAVAL TLGLANTMCD SGISSTFDIS ELENVTDAAD MLCNQKRQRY SNGVVDCIMG SVSEEKTLSE VRSLSSDFSV TVQESEEDEP LVSDATIISE
101: GLIVVDARSE ISLPDTVETD NGRVLATAII LNETTIEQVP TAEVLIASLN HDVNMEVATS EVVIRLPEEN PNVARGSRSV YELECIPLWG TISICGGRSE
201: MEDAVRALPH FLKIPIKMLM GDHEGMSPSL PYLTSHFFGV YDGHGGAQVA DYCHDRIHSA LAEEIERIKE ELCRRNTGEG RQVQWEKVFV DCYLKVDDEV
301: KGKINRPVVG SSDRMVLEAV SPETVGSTAV VALVCSSHII VSNCGDSRAV LLRGKDSMPL SVDHKPDRED EYARIEKAGG KVIQWQGARV SGVLAMSRSI
401: GDQYLEPFVI PDPEVTFMPR AREDECLILA SDGLWDVMSN QEACDFARRR ILAWHKKNGA LPLAERGVGE DQACQAAAEY LSKLAIQMGS KDNISIIVID
501: LKAQRKFKTR S
Arabidopsis Description
HAB2Protein phosphatase 2C 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNP9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.