CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92493
EER96576
EES00964
EES01744
EES04686
EES15751
KXG22152
KXG22422
KXG22681
KXG35986
OQU83031
OQU87413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33610.1	EES15751	AT1G21700.1	12140326
AT2G33610.1	OQU83031	AT1G21700.1	12140326
AT2G33610.1	EES15751	AT1G21700.1	16845477
AT2G33610.1	OQU83031	AT1G21700.1	16845477
AT2G33610.1	EES00964	AT1G72770.1	19033529
AT2G33610.1	KXG22422	AT1G72770.1	19033529
AT2G33610.1	KXG22681	AT1G72770.1	19033529
AT2G33610.1	OQU87413	AT1G72770.1	19033529
AT2G33610.1	EES04686	AT2G33610.1	12140326
AT2G33610.1	EES04686	AT2G33610.1	16845477
AT2G33610.1	EER92493	AT3G11410.1	19033529
AT2G33610.1	EER96576	AT3G11410.1	19033529
AT2G33610.1	EES01744	AT3G11410.1	19033529
AT2G33610.1	KXG22152	AT3G11410.1	19033529
AT2G33610.1	KXG35986	AT3G11410.1	19033529

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053687_P001	Maize	plastid	83.33	82.83
Os02t0194000-01	Rice	nucleus	53.82	66.34
TraesCS6B01G195400.1	Wheat	plastid	64.66	65.31
HORVU6Hr1G034070.2	Barley	plastid	63.86	63.98
TraesCS6A01G167800.1	Wheat	plastid	59.44	59.2
TraesCS6D01G156700.3	Wheat	plastid	59.04	59.15
GSMUA_AchrUn_...	Banana	plastid	44.98	45.34
CDY23721	Canola	plastid	36.35	39.43
Bra021864.1-P	Field mustard	plastid	36.14	39.22
CDY37705	Canola	plastid	36.14	39.22
AT2G33610.1	Thale cress	nucleus	36.75	39.02
KRH60872	Soybean	nucleus	37.75	38.84
VIT_18s0122g00670.t01	Wine grape	nucleus, plastid	38.35	38.82
KRH51554	Soybean	nucleus	38.15	38.7
Solyc04g082760.2.1	Tomato	nucleus	36.95	37.63
PGSC0003DMT400025895	Potato	nucleus	37.15	37.07
EES10999	Sorghum	nucleus	26.51	23.78
EES15751	Sorghum	nucleus	22.89	14.73
OQU83031	Sorghum	cytosol, mitochondrion, nucleus, plastid	22.49	14.43
EER93546	Sorghum	nucleus	22.49	12.32
EES10369	Sorghum	nucleus	21.08	11.63

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	EntrezGene:8082888	UniProt:C5XXF4	ncoils:Coil
EnsemblPlants:EES04686	ProteinID:EES04686	ProteinID:EES04686.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR017884	InterPro:IPR036388	PFAM:PF00249	PFAM:PF04433
PFAM:PF16495	PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF44	InterPro:SANT/Myb
InterPro:SANT_dom	SMART:SM00717	InterPro:SMARCC_C	EnsemblPlantsGene:SORBI_3004G077600	SUPFAM:SSF46689	InterPro:SWIRM
unigene:Sbi.6440	UniParc:UPI0001A8574B	InterPro:WH-like_DNA-bd_sf	RefSeq:XP_002451710.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:+:6396511..6401125

Molecular Weight (calculated)

54585.2 Da

IEP (calculated)

5.727

GRAVY (calculated)

-0.464

Length

498 amino acids

Sequence
(BLAST)

001: MATTATTTAT VTAPAATANF VPTPTPPHPR PAAPPALRAP STLGPVKSEA PPTPSSSTAT TAAAAAAVAE DPSYIITVPS YSAWFSFDSI HDTERRLLPE
101: FFEGEAAAAS GCRGPHAYKY YRDSLIRRFR ARPGRRLTLT EARRGLVGDV GSVRRVFDFL EEWGLINYGA LPSGSKQAKE KREEAAQQST LPSGATVPRK
201: LCTGCRTVCG LAYFACDKAD ISLCTRCYVN NNYRPGLSPA NFKRVEITED SKADWTDKET LHLLEAVLHY GEDWKKVSEH VGSRSEKDCI ARFIRLPFGE
301: QFMGPREDRM GFENNDDNTD EPGADVSKRL HLTPLADASN PIMAQVAFLS AIVGPDVASA AAQAAISAQS RVDLNDSEIE TSINSTKEEE SSHTNGLSVN
401: DLLKEAAANA RAQLEKERNS IEQSLSNIVD VQMMEIQDKI CRFEQKEMLM EKERQQLNCL RDILFTDQLA VMQHQQRTPA VVTECKGDEK PKPLANMS

Best Arabidopsis Sequence Match ( AT2G33610.1 )
(BLAST)

001: MAMKAPDPGG SGEILPSTPS LSETTSGGAA AASKSAQLPS SSSDIDNIHV PSYSSWFSWT DINDCEVRSL PEFFDSRSSS KNPKFYLYLR NSIIKQYRDD
101: HPRKISFTDV RRTLVSDVVS IRRVFDFLDS WGLINYNSSA SAKPLKWEEK EAGKSAGDAA SEPATTVKET AKRNCNGCKA ICSIACFACD KYDLTLCARC
201: YVRSNYRVGI NSSEFKRVEI SEESKPEWSD KEILLLLEAV MHYGDDWKKV ASHVIGRTEK DCVSQFVKLP FGEQFVKESD SEDGLEMFDQ IKDSDIPESE
301: GIDKDGSSPN KRIKLTPLAD ASNPIMAQAA FLSALAGTNV AEAAARAAVR ALSDVDYEAD KNASRDPNRQ DANAASSGET TRNESERAWA DAKSLIEKEE
401: HEVEGAIKET VEVEMKKIRD RIVHFEKLDL EMERSRKQLE EVRNLLFVDQ LNIFFHTRKA RKTEDRIEC

Arabidopsis Description

SWI3BSWI/SNF complex subunit SWI3B [Source:UniProtKB/Swiss-Prot;Acc:Q84JG2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.