Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS6B01G195400.1 | Wheat | plastid | 68.56 | 56.19 |
HORVU6Hr1G034070.2 | Barley | plastid | 67.08 | 54.53 |
EES04686 | Sorghum | plastid | 66.34 | 53.82 |
Zm00001d053687_P001 | Maize | plastid | 66.58 | 53.69 |
TraesCS6A01G167800.1 | Wheat | plastid | 61.63 | 49.8 |
TraesCS6D01G156700.3 | Wheat | plastid | 59.41 | 48.29 |
GSMUA_AchrUn_... | Banana | plastid | 43.56 | 35.63 |
CDY37705 | Canola | plastid | 37.13 | 32.68 |
CDY23721 | Canola | plastid | 35.89 | 31.59 |
AT2G33610.1 | Thale cress | nucleus | 36.39 | 31.34 |
Bra021864.1-P | Field mustard | plastid | 35.15 | 30.94 |
KRH51554 | Soybean | nucleus | 36.39 | 29.94 |
VIT_18s0122g00670.t01 | Wine grape | nucleus, plastid | 36.39 | 29.88 |
KRH60872 | Soybean | nucleus | 35.4 | 29.55 |
Solyc04g082760.2.1 | Tomato | nucleus | 33.91 | 28.02 |
PGSC0003DMT400025895 | Potato | nucleus | 34.41 | 27.86 |
Os04t0480300-01 | Rice | cytosol | 24.26 | 17.5 |
Os11t0183700-01 | Rice | mitochondrion | 23.76 | 12.24 |
Os04t0480400-01 | Rice | nucleus | 6.93 | 10.18 |
Os12t0176700-00 | Rice | nucleus | 20.79 | 9.86 |
Os04t0110300-02 | Rice | plasma membrane | 20.54 | 9.37 |
Os03t0722100-01 | Rice | cytosol, nucleus | 11.39 | 8.6 |
Protein Annotations
Gene3D:1.10.10.60 | MapMan:12.4.2.1 | UniProt:A0A0P0VFV4 | ProteinID:BAS77434.1 | ncoils:Coil | GO:GO:0003674 |
GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005634 | InterPro:Homeobox-like_sf | InterPro:IPR017884 | EnsemblPlantsGene:Os02g0194000 | EnsemblPlants:Os02t0194000-01 | PFAM:PF00249 |
PFAM:PF16495 | PFscan:PS51293 | PANTHER:PTHR12802 | PANTHER:PTHR12802:SF44 | InterPro:SANT/Myb | InterPro:SANT_dom |
SMART:SM00717 | InterPro:SMARCC_C | SUPFAM:SSF46689 | UniParc:UPI000393A71C | SEG:seg | : |
Description
SWIRM domain-containing protein CHB702Similar to ATSWI3B. (Os02t0194000-01)
Coordinates
chr2:+:5238175..5242106
Molecular Weight (calculated)
43562.2 Da
IEP (calculated)
5.792
GRAVY (calculated)
-0.445
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: SSHGHAVDAS AGGRGGGGGD YGDGELHASR SAAAAVLGGA VLPAPLDGRH RQDGGPSAAI HLDFLEEWGL INYGASPSGA KQGRDKKEEA ALSQSSLPIG
101: ATMPSKLCTG CRTVCGLAYF SCEKADISLC ARCYVRANYR PGLTSADFKR IEITEDAKSD WTDKETLHLL EAVLHYGEDW KKVSHHVGSR SEKDCIARFT
201: RLPFGEQFMG PKEDKIQFGN DCDLNEESGS HISKRLRLTP LADASNPIMA QVAFLSAIVG SDVAVAAGQA AISAQSQVDI SASETDSSIN ISKEEESSCT
301: NGLSANDLLK EASANAQVQL EKERKAIEQS LSDIVGVQMK EIQDKIRRFE QKELLMEKER KQLHCLKELL FSDQLAVVQH QRRPPAVTTE SKDDEKPKPV
401: ISIS
101: ATMPSKLCTG CRTVCGLAYF SCEKADISLC ARCYVRANYR PGLTSADFKR IEITEDAKSD WTDKETLHLL EAVLHYGEDW KKVSHHVGSR SEKDCIARFT
201: RLPFGEQFMG PKEDKIQFGN DCDLNEESGS HISKRLRLTP LADASNPIMA QVAFLSAIVG SDVAVAAGQA AISAQSQVDI SASETDSSIN ISKEEESSCT
301: NGLSANDLLK EASANAQVQL EKERKAIEQS LSDIVGVQMK EIQDKIRRFE QKELLMEKER KQLHCLKELL FSDQLAVVQH QRRPPAVTTE SKDDEKPKPV
401: ISIS
001: MAMKAPDPGG SGEILPSTPS LSETTSGGAA AASKSAQLPS SSSDIDNIHV PSYSSWFSWT DINDCEVRSL PEFFDSRSSS KNPKFYLYLR NSIIKQYRDD
101: HPRKISFTDV RRTLVSDVVS IRRVFDFLDS WGLINYNSSA SAKPLKWEEK EAGKSAGDAA SEPATTVKET AKRNCNGCKA ICSIACFACD KYDLTLCARC
201: YVRSNYRVGI NSSEFKRVEI SEESKPEWSD KEILLLLEAV MHYGDDWKKV ASHVIGRTEK DCVSQFVKLP FGEQFVKESD SEDGLEMFDQ IKDSDIPESE
301: GIDKDGSSPN KRIKLTPLAD ASNPIMAQAA FLSALAGTNV AEAAARAAVR ALSDVDYEAD KNASRDPNRQ DANAASSGET TRNESERAWA DAKSLIEKEE
401: HEVEGAIKET VEVEMKKIRD RIVHFEKLDL EMERSRKQLE EVRNLLFVDQ LNIFFHTRKA RKTEDRIEC
101: HPRKISFTDV RRTLVSDVVS IRRVFDFLDS WGLINYNSSA SAKPLKWEEK EAGKSAGDAA SEPATTVKET AKRNCNGCKA ICSIACFACD KYDLTLCARC
201: YVRSNYRVGI NSSEFKRVEI SEESKPEWSD KEILLLLEAV MHYGDDWKKV ASHVIGRTEK DCVSQFVKLP FGEQFVKESD SEDGLEMFDQ IKDSDIPESE
301: GIDKDGSSPN KRIKLTPLAD ASNPIMAQAA FLSALAGTNV AEAAARAAVR ALSDVDYEAD KNASRDPNRQ DANAASSGET TRNESERAWA DAKSLIEKEE
401: HEVEGAIKET VEVEMKKIRD RIVHFEKLDL EMERSRKQLE EVRNLLFVDQ LNIFFHTRKA RKTEDRIEC
Arabidopsis Description
SWI3BSWI/SNF complex subunit SWI3B [Source:UniProtKB/Swiss-Prot;Acc:Q84JG2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.