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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6B01G195400.1 Wheat plastid 68.56 56.19
HORVU6Hr1G034070.2 Barley plastid 67.08 54.53
EES04686 Sorghum plastid 66.34 53.82
Zm00001d053687_P001 Maize plastid 66.58 53.69
TraesCS6A01G167800.1 Wheat plastid 61.63 49.8
TraesCS6D01G156700.3 Wheat plastid 59.41 48.29
GSMUA_AchrUn_... Banana plastid 43.56 35.63
CDY37705 Canola plastid 37.13 32.68
CDY23721 Canola plastid 35.89 31.59
AT2G33610.1 Thale cress nucleus 36.39 31.34
Bra021864.1-P Field mustard plastid 35.15 30.94
KRH51554 Soybean nucleus 36.39 29.94
VIT_18s0122g00670.t01 Wine grape nucleus, plastid 36.39 29.88
KRH60872 Soybean nucleus 35.4 29.55
Solyc04g082760.2.1 Tomato nucleus 33.91 28.02
PGSC0003DMT400025895 Potato nucleus 34.41 27.86
Os04t0480300-01 Rice cytosol 24.26 17.5
Os11t0183700-01 Rice mitochondrion 23.76 12.24
Os04t0480400-01 Rice nucleus 6.93 10.18
Os12t0176700-00 Rice nucleus 20.79 9.86
Os04t0110300-02 Rice plasma membrane 20.54 9.37
Os03t0722100-01 Rice cytosol, nucleus 11.39 8.6
Protein Annotations
Gene3D:1.10.10.60MapMan:12.4.2.1UniProt:A0A0P0VFV4ProteinID:BAS77434.1ncoils:CoilGO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634InterPro:Homeobox-like_sfInterPro:IPR017884EnsemblPlantsGene:Os02g0194000EnsemblPlants:Os02t0194000-01PFAM:PF00249
PFAM:PF16495PFscan:PS51293PANTHER:PTHR12802PANTHER:PTHR12802:SF44InterPro:SANT/MybInterPro:SANT_dom
SMART:SM00717InterPro:SMARCC_CSUPFAM:SSF46689UniParc:UPI000393A71CSEG:seg:
Description
SWIRM domain-containing protein CHB702Similar to ATSWI3B. (Os02t0194000-01)
Coordinates
chr2:+:5238175..5242106
Molecular Weight (calculated)
43562.2 Da
IEP (calculated)
5.792
GRAVY (calculated)
-0.445
Length
404 amino acids
Sequence
(BLAST)
001: SSHGHAVDAS AGGRGGGGGD YGDGELHASR SAAAAVLGGA VLPAPLDGRH RQDGGPSAAI HLDFLEEWGL INYGASPSGA KQGRDKKEEA ALSQSSLPIG
101: ATMPSKLCTG CRTVCGLAYF SCEKADISLC ARCYVRANYR PGLTSADFKR IEITEDAKSD WTDKETLHLL EAVLHYGEDW KKVSHHVGSR SEKDCIARFT
201: RLPFGEQFMG PKEDKIQFGN DCDLNEESGS HISKRLRLTP LADASNPIMA QVAFLSAIVG SDVAVAAGQA AISAQSQVDI SASETDSSIN ISKEEESSCT
301: NGLSANDLLK EASANAQVQL EKERKAIEQS LSDIVGVQMK EIQDKIRRFE QKELLMEKER KQLHCLKELL FSDQLAVVQH QRRPPAVTTE SKDDEKPKPV
401: ISIS
Best Arabidopsis Sequence Match ( AT2G33610.1 )
(BLAST)
001: MAMKAPDPGG SGEILPSTPS LSETTSGGAA AASKSAQLPS SSSDIDNIHV PSYSSWFSWT DINDCEVRSL PEFFDSRSSS KNPKFYLYLR NSIIKQYRDD
101: HPRKISFTDV RRTLVSDVVS IRRVFDFLDS WGLINYNSSA SAKPLKWEEK EAGKSAGDAA SEPATTVKET AKRNCNGCKA ICSIACFACD KYDLTLCARC
201: YVRSNYRVGI NSSEFKRVEI SEESKPEWSD KEILLLLEAV MHYGDDWKKV ASHVIGRTEK DCVSQFVKLP FGEQFVKESD SEDGLEMFDQ IKDSDIPESE
301: GIDKDGSSPN KRIKLTPLAD ASNPIMAQAA FLSALAGTNV AEAAARAAVR ALSDVDYEAD KNASRDPNRQ DANAASSGET TRNESERAWA DAKSLIEKEE
401: HEVEGAIKET VEVEMKKIRD RIVHFEKLDL EMERSRKQLE EVRNLLFVDQ LNIFFHTRKA RKTEDRIEC
Arabidopsis Description
SWI3BSWI/SNF complex subunit SWI3B [Source:UniProtKB/Swiss-Prot;Acc:Q84JG2]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.