Factsheet for HORVU6Hr1G034070.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G080290.6
HORVU1Hr1G094840.9
HORVU3Hr1G050340.1
HORVU3Hr1G067360.1
HORVU3Hr1G067380.4
HORVU3Hr1G085930.3
HORVU4Hr1G017950.27
HORVU4Hr1G060370.1
HORVU5Hr1G037060.1
HORVU6Hr1G034070.2
HORVU7Hr1G029040.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33610.1	HORVU4Hr1G017950.27	AT1G21700.1	12140326
AT2G33610.1	HORVU5Hr1G037060.1	AT1G21700.1	12140326
AT2G33610.1	HORVU4Hr1G017950.27	AT1G21700.1	16845477
AT2G33610.1	HORVU5Hr1G037060.1	AT1G21700.1	16845477
AT2G33610.1	HORVU1Hr1G080290.6	AT1G72770.1	19033529
AT2G33610.1	HORVU1Hr1G094840.9	AT1G72770.1	19033529
AT2G33610.1	HORVU3Hr1G050340.1	AT1G72770.1	19033529
AT2G33610.1	HORVU3Hr1G067360.1	AT1G72770.1	19033529
AT2G33610.1	HORVU3Hr1G067380.4	AT1G72770.1	19033529
AT2G33610.1	HORVU7Hr1G029040.1	AT1G72770.1	19033529
AT2G33610.1	HORVU6Hr1G034070.2	AT2G33610.1	12140326
AT2G33610.1	HORVU6Hr1G034070.2	AT2G33610.1	16845477
AT2G33610.1	HORVU3Hr1G085930.3	AT3G11410.1	19033529
AT2G33610.1	HORVU4Hr1G060370.1	AT3G11410.1	19033529

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G195400.1	Wheat	plastid	90.95	91.68
TraesCS6A01G167800.1	Wheat	plastid	85.11	84.6
TraesCS6D01G156700.3	Wheat	plastid	77.87	77.87
Os02t0194000-01	Rice	nucleus	54.53	67.08
EES04686	Sorghum	plastid	63.98	63.86
Zm00001d053687_P001	Maize	plastid	63.98	63.47
GSMUA_AchrUn_...	Banana	plastid	44.87	45.14
KRH60872	Soybean	nucleus	40.44	41.53
KRH51554	Soybean	nucleus	39.64	40.12
AT2G33610.1	Thale cress	nucleus	36.82	39.02
CDY23721	Canola	plastid	35.61	38.56
CDY37705	Canola	plastid	35.61	38.56
VIT_18s0122g00670.t01	Wine grape	nucleus, plastid	38.03	38.41
Bra021864.1-P	Field mustard	plastid	35.41	38.34
Solyc04g082760.2.1	Tomato	nucleus	34.81	35.38
PGSC0003DMT400025895	Potato	nucleus	35.41	35.27
HORVU2Hr1G082870.3	Barley	mitochondrion	11.67	28.02
HORVU2Hr1G082880.12	Barley	nucleus	13.28	17.37
HORVU4Hr1G017950.27	Barley	nucleus	15.9	14.85
HORVU5Hr1G037060.1	Barley	nucleus, plastid	21.13	12.68
HORVU4Hr1G008820.1	Barley	nucleus	21.93	11.44

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	UniProt:A0A287TW00	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:HORVU6Hr1G034070	EnsemblPlants:HORVU6Hr1G034070.2	InterPro:Homeobox-like_sf	InterPro:IPR007526
InterPro:IPR017884	InterPro:IPR036388	PFAM:PF00249	PFAM:PF04433	PFAM:PF16495	PFscan:PS50934
PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF44	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00717
InterPro:SMARCC_C	SUPFAM:SSF46689	InterPro:SWIRM	UniParc:UPI000B48519F	InterPro:WH-like_DNA-bd_sf	SEG:seg

Description

No Description!

Coordinates

chrchr6H:+:157614774..157619941

Molecular Weight (calculated)

54414.2 Da

IEP (calculated)

5.919

GRAVY (calculated)

-0.467

Length

497 amino acids

Sequence
(BLAST)

001: MATPPAPVPP ATANSAPTPT RSPFKAPPFS QPPSTAGTLK TEIPPASTSA ATAAGVPAVG ASAEDSPHVI TVPSYSGWFS YDSISDTERR LLPEFFEGEV
101: AVVSGSRGPE AYKYYRNSLV KRFRARPARR LTLTEARRGL IGDVGSVRRV FDFLEEWGLI NHGAPPLGAK QGKDKREEGA TSQSSLPAGP TTPKKLCVGC
201: RSVCGSAYFT CEKADISICC RCFVRGNYRP GLTPADFKKV EISEDAKSDW TDKETLHLLE AVLHYGEDWK KVSEHVGSRS EKDCIARLIR LSFGEQFMGS
301: KEQKMEFEID DDVINESRAE IPKRLRLTPL ADASNPIMAQ VAFLSAIVGS GVAAAAAQAA ISAQSQVDMN DSQTDSPTSS TKEEVFSAES SYTNGLSDTD
401: LLKEASANAQ VQLQKEQKDI EQSLSAIVDV QMKEIQDKIS RFEQKELLME KEREQLHHLR ELLFMDQLAV VQHQRRPHVV AAENKEEEKP KPIITTS

Best Arabidopsis Sequence Match ( AT2G33610.1 )
(BLAST)

001: MAMKAPDPGG SGEILPSTPS LSETTSGGAA AASKSAQLPS SSSDIDNIHV PSYSSWFSWT DINDCEVRSL PEFFDSRSSS KNPKFYLYLR NSIIKQYRDD
101: HPRKISFTDV RRTLVSDVVS IRRVFDFLDS WGLINYNSSA SAKPLKWEEK EAGKSAGDAA SEPATTVKET AKRNCNGCKA ICSIACFACD KYDLTLCARC
201: YVRSNYRVGI NSSEFKRVEI SEESKPEWSD KEILLLLEAV MHYGDDWKKV ASHVIGRTEK DCVSQFVKLP FGEQFVKESD SEDGLEMFDQ IKDSDIPESE
301: GIDKDGSSPN KRIKLTPLAD ASNPIMAQAA FLSALAGTNV AEAAARAAVR ALSDVDYEAD KNASRDPNRQ DANAASSGET TRNESERAWA DAKSLIEKEE
401: HEVEGAIKET VEVEMKKIRD RIVHFEKLDL EMERSRKQLE EVRNLLFVDQ LNIFFHTRKA RKTEDRIEC

Arabidopsis Description

SWI3BSWI/SNF complex subunit SWI3B [Source:UniProtKB/Swiss-Prot;Acc:Q84JG2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.