Factsheet for HORVU4Hr1G017950.27

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 1
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G082880.12
HORVU6Hr1G034070.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G21700.1	HORVU6Hr1G034070.2	AT2G33610.1	12140326
AT1G21700.1	HORVU6Hr1G034070.2	AT2G33610.1	16845477
AT1G21700.1	HORVU2Hr1G082880.12	AT2G47620.1	16055636

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G218700.1	Wheat	cytosol, nucleus, plastid	72.93	88.99
TraesCS4B01G097500.1	Wheat	cytosol, mitochondrion, nucleus	81.02	88.32
TraesCS4D01G093900.2	Wheat	cytosol, nucleus, plastid	89.29	61.37
Os11t0183700-01	Rice	mitochondrion	73.68	50.0
OQU83031	Sorghum	cytosol, mitochondrion, nucleus, plastid	71.43	48.97
Zm00001d000110_P003	Maize	mitochondrion	69.92	47.45
HORVU5Hr1G037060.1	Barley	nucleus, plastid	63.91	41.06
GSMUA_Achr6P25400_001	Banana	nucleus	56.02	38.01
VIT_18s0001g02190.t01	Wine grape	nucleus	25.56	37.78
GSMUA_Achr8P30120_001	Banana	nucleus	54.51	37.13
KRH64632	Soybean	nucleus	46.43	31.46
KRH53271	Soybean	nucleus	46.24	31.34
KRH16394	Soybean	nucleus	44.55	30.54
KRH17984	Soybean	nucleus	43.42	30.2
Solyc06g060120.2.1	Tomato	nucleus	43.23	29.08
CDY08183	Canola	cytosol, nucleus, vacuole	40.23	28.69
AT1G21700.1	Thale cress	nucleus	43.05	28.38
Bra016409.1-P	Field mustard	nucleus	42.29	28.37
CDX96578	Canola	nucleus	42.29	28.34
CDY58587	Canola	cytosol, endoplasmic reticulum, nucleus	40.41	28.22
CDY04665	Canola	cytosol, nucleus, vacuole	39.47	28.19
Bra017943.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	32.14	27.71
HORVU2Hr1G082870.3	Barley	mitochondrion	8.27	21.26
VIT_18s0001g02160.t01	Wine grape	nucleus	14.85	17.83
HORVU6Hr1G034070.2	Barley	plastid	14.85	15.9
HORVU4Hr1G008820.1	Barley	nucleus	20.3	11.33
HORVU2Hr1G082880.12	Barley	nucleus	7.71	10.79
TraesCS4B01G097600.1	Wheat	nucleus	1.13	2.63

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	UniProt:A0A287NET6	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	EnsemblPlantsGene:HORVU4Hr1G017950	EnsemblPlants:HORVU4Hr1G017950.27	InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR017884
InterPro:IPR036388	PFAM:PF00249	PFAM:PF04433	PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802
PANTHER:PTHR12802:SF61	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00717	SUPFAM:SSF46689	InterPro:SWIRM
UniParc:UPI000B46EC4B	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr4H:+:80763299..80766084

Molecular Weight (calculated)

58769.0 Da

IEP (calculated)

5.442

GRAVY (calculated)

-0.411

Length

532 amino acids

Sequence
(BLAST)

001: MPRKASCTPD SRTKWRKRKR NSDALPLPSA AADHSDDSDN DDDDTAVPSP AVDNADYEIL AGAAARNPVP DPREAELLSS AEVISTFPAA TRRTVNRPHP
101: SVMAVVAAER SAYVGDVSAA APPALENISH GQLQVLSRAL PDHPSLSTDP DRPSSYVCTP PPLMEGHGVH KQFQGRLHVV PKHSDWFSPG TVHRLERQVV
201: PHFFTGKSLG HTPEKFIMLR NRIIAKYLEN PGKRLGFAEC QGFVVNTGEL YDLSRIVRFL DTWGIINYLA VGLVHRGLRV AASLLIEEPA GELQLLTTAL
301: KSIDGLILFD RPKCSLQADD ISSLTSSSSN PEVMDFDADA EFTELEGKIR ERLSESYCSY CSQSLCNLYY QSQKELIEQA VALCPDCFHD ARYIIGHSSL
401: DFQRVDGGKD GSESEGDNWT DRETLLLLEG IENHNDNWNN IADHVRTKSK AQCIYHFIRL PVEDILLENI EVSDASKSFI PESNVYPHSD SNGSTSGNLP
501: QSIQHGNQLP FISSSNPVMS LLPIKEMPIK PR

Best Arabidopsis Sequence Match ( AT1G21700.1 )
(BLAST)

001: MPASEDRRGK WKRKKRGGLS AARKPKQEEE DMEEEDEENN NNNNEEMDDV ENADELQQNG GATPDPGLGI GEVVEDSGSR ISDFPAVVKR VVIRPHASVM
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN

Arabidopsis Description

SWI3CSWI/SNF complex subunit SWI3C [Source:UniProtKB/Swiss-Prot;Acc:Q9XI07]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.