Factsheet for Zm00001d000110_P003

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
cytosol 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003284_P001
Zm00001d053687_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G21700.1	Zm00001d053687_P001	AT2G33610.1	12140326
AT1G21700.1	Zm00001d053687_P001	AT2G33610.1	16845477
AT1G21700.1	Zm00001d003284_P001	AT2G47620.1	16055636

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU83031	Sorghum	cytosol, mitochondrion, nucleus, plastid	90.31	91.24
Os11t0183700-01	Rice	mitochondrion	76.91	76.91
TraesCS4A01G218700.1	Wheat	cytosol, nucleus, plastid	41.07	73.85
TraesCS4B01G097500.1	Wheat	cytosol, mitochondrion, nucleus	45.41	72.95
TraesCS4D01G093900.2	Wheat	cytosol, nucleus, plastid	69.52	70.41
HORVU4Hr1G017950.27	Barley	nucleus	47.45	69.92
Zm00001d041847_P002	Maize	nucleus	63.65	64.55
GSMUA_Achr6P25400_001	Banana	nucleus	57.4	57.4
GSMUA_Achr8P30120_001	Banana	nucleus	56.12	56.34
TraesCS4B01G097600.1	Wheat	nucleus	15.05	51.75
KRH53271	Soybean	nucleus	46.05	45.99
Bra017943.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	36.1	45.87
KRH64632	Soybean	nucleus	45.92	45.86
VIT_18s0001g02160.t01	Wine grape	nucleus	25.13	44.47
CDY08183	Canola	cytosol, nucleus, vacuole	41.84	43.97
CDY58587	Canola	cytosol, endoplasmic reticulum, nucleus	42.47	43.7
KRH16394	Soybean	nucleus	43.11	43.56
KRH17984	Soybean	nucleus	42.47	43.53
CDY04665	Canola	cytosol, nucleus, vacuole	41.2	43.36
Solyc06g060120.2.1	Tomato	nucleus	43.37	42.98
AT1G21700.1	Thale cress	nucleus	44.01	42.75
Bra016409.1-P	Field mustard	nucleus	43.24	42.75
CDX96578	Canola	nucleus	43.24	42.7
VIT_18s0001g02190.t01	Wine grape	nucleus	18.75	40.83
Zm00001d053687_P001	Maize	plastid	14.54	22.75
Zm00001d033825_P001	Maize	nucleus	18.75	16.28
Zm00001d013391_P006	Maize	nucleus	18.88	16.21
Zm00001d003284_P001	Maize	nucleus	16.84	14.97
Zm00001d004521_P001	Maize	nucleus, plastid	15.05	14.06

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	EntrezGene:100279731	MapMan:12.4.2.1	UniProt:A0A1X7YEV5	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR017884
InterPro:IPR036388	PFAM:PF00249	PFAM:PF04433	PFAM:PF16495	PFscan:PS50934	PFscan:PS51293
PANTHER:PTHR12802	PANTHER:PTHR12802:SF61	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00717	InterPro:SMARCC_C
SUPFAM:SSF46689	InterPro:SWIRM	UniParc:UPI000842F551	InterPro:WH-like_DNA-bd_sf	EnsemblPlantsGene:Zm00001d000110	EnsemblPlants:Zm00001d000110_P003
EnsemblPlants:Zm00001d000110_T003	SEG:seg	:	:	:	:

Description

MYB-related-transcription factor 61SWI/SNF complex subunit SWI3C

Coordinates

chrB73V4_ctg52:+:187986..193349

Molecular Weight (calculated)

84850.8 Da

IEP (calculated)

6.211

GRAVY (calculated)

-0.414

Length

784 amino acids

Sequence
(BLAST)

001: MPRKASSTSD SRLKWRKRKL NPDASPSKPS ISTAAADHSS DSDSAALNDD EDPSALGATG DGATDNDADA AASEDPAVEL REAEVLPSAD AISSFPAAKR
101: RVVNRPHASI LALLEAERSA CSGDVPTVAL PALENISHGQ LQVLSGVLPD HPSLATDPDK PSLYVCTPPP LMEGHGVPKQ FQGRFHVVPK HSDWFSPGTV
201: HRLERQVVPH FFTGKSPGHT PEKYVMLRNK VIAKYLENPS KRLAFAECQG LVGSTSELYD LSRIVRFLDT WGIINYLAAG SVHRGLRMAT SLLREEPTGE
301: LQLLTAPLKS IDGLILFDRP KCSLPVEDIS RMAATSSNSE AVDFDAAFSD LDGKIRERLS ESSCSYCLQP LPSLHYRSQK EADIFLCSDC FHDARYITGH
401: SCLDFQRVDG DNDESENDSD KWTDEETLLL LEGIEKYNDN WDDIAGHVGT KSKAQCIYHF IRLPVEDCLL ENVEIPNAPI PFRPQSNGYQ CLDSNGSTSG
501: APVQNIQQGN ELPFINSSNP VMSLVAFLAS SIGPRVAASC AHAALSFLTR DEDSRVSSEG SHAGGLGNGA NPNFQNHNGA SPSISPGNVK YAAMLGLSAA
601: AMKSKLFADQ EEREVQRLTA TVINHQLKRL ELKLKQFAEV ETLLLKECEQ VERVRHRISA ERVRMRSALL GPTGSGLPGG SCSTMPSNPA GMSPRPVGVP
701: GYMPQTSMPA TYANNLQGHG NPQMPFLHQR PQMLSFGPRL PLSAIQTQPS PQSSNMFNSG MPNSIAPNHH QLLRSSSGNN SSAG

Best Arabidopsis Sequence Match ( AT1G21700.1 )
(BLAST)

001: MPASEDRRGK WKRKKRGGLS AARKPKQEEE DMEEEDEENN NNNNEEMDDV ENADELQQNG GATPDPGLGI GEVVEDSGSR ISDFPAVVKR VVIRPHASVM
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN

Arabidopsis Description

SWI3CSWI/SNF complex subunit SWI3C [Source:UniProtKB/Swiss-Prot;Acc:Q9XI07]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.