Factsheet for Zm00001d041847_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003284_P001
Zm00001d053687_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G21700.1	Zm00001d053687_P001	AT2G33610.1	12140326
AT1G21700.1	Zm00001d053687_P001	AT2G33610.1	16845477
AT1G21700.1	Zm00001d003284_P001	AT2G47620.1	16055636

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15751	Sorghum	nucleus	91.72	91.6
TraesCS5D01G128700.1	Wheat	nucleus	71.15	69.89
TraesCS5B01G119800.1	Wheat	nucleus	71.02	69.23
TraesCS5A01G113500.1	Wheat	nucleus	70.63	69.03
HORVU5Hr1G037060.1	Barley	nucleus, plastid	70.76	66.06
Zm00001d000110_P003	Maize	mitochondrion	64.55	63.65
Os12t0176700-00	Rice	nucleus	62.74	56.92
GSMUA_Achr6P25400_001	Banana	nucleus	56.27	55.48
GSMUA_Achr8P30120_001	Banana	nucleus	56.02	55.44
VIT_18s0001g02160.t01	Wine grape	nucleus	26.52	46.28
KRH64632	Soybean	nucleus	45.67	44.97
KRH53271	Soybean	nucleus	45.28	44.59
Bra017943.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	35.58	44.57
KRH16394	Soybean	nucleus	43.86	43.69
KRH17984	Soybean	nucleus	42.56	43.01
CDY08183	Canola	cytosol, nucleus, vacuole	41.27	42.76
CDY58587	Canola	cytosol, endoplasmic reticulum, nucleus	41.79	42.39
Solyc06g060120.2.1	Tomato	nucleus	43.34	42.35
CDY04665	Canola	cytosol, nucleus, vacuole	40.62	42.15
AT1G21700.1	Thale cress	nucleus	43.6	41.76
Bra016409.1-P	Field mustard	nucleus	42.69	41.61
CDX96578	Canola	nucleus	42.69	41.56
VIT_18s0001g02190.t01	Wine grape	nucleus	18.37	39.44
Zm00001d053687_P001	Maize	plastid	15.39	23.75
Zm00001d033825_P001	Maize	nucleus	18.76	16.06
Zm00001d013391_P006	Maize	nucleus	18.5	15.66
Zm00001d004521_P001	Maize	nucleus, plastid	15.52	14.3
Zm00001d003284_P001	Maize	nucleus	15.65	13.72

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	EntrezGene:100216783	MapMan:12.4.2.1	UniProt:A0A1D6MYR2	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR017884
InterPro:IPR036388	ProteinID:ONM33830.1	PFAM:PF00249	PFAM:PF04433	PFAM:PF16495	PFscan:PS50934
PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF61	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00717
InterPro:SMARCC_C	SUPFAM:SSF46689	InterPro:SWIRM	UniParc:UPI000220ABFA	InterPro:WH-like_DNA-bd_sf	EnsemblPlantsGene:Zm00001d041847
EnsemblPlants:Zm00001d041847_P002	EnsemblPlants:Zm00001d041847_T002	SEG:seg	:	:	:

Description

MYB-related-transcription factor 14Switch/sucrose nonfermenting 3C

Coordinates

chr3:-:140452942..140459568

Molecular Weight (calculated)

83197.3 Da

IEP (calculated)

6.647

GRAVY (calculated)

-0.352

Length

773 amino acids

Sequence
(BLAST)

001: MPRKASSNSD ARAKSRKRKR AAASASPSKQ PDDHSDDSDT AAAANGDDET SRAASVNGGG GTLAGVGGDD DPVLDLRAAE VLSSSAEPVS AFPAAVRRAV
101: SRPHPSVLAV IAAERAAASS DDAPVTPASV PVLENISHGQ LQVISAMLPD HPSLSYDPDK PSTYVCTPPP LMEGCGVHKQ FYDKLHIVPR HSDWFVPQTV
201: HRLERQVVPQ YFSGKSQGQT PEKYIMLRNK VIAKYLERPG KRLVFAECQG LVTSTPELYD LSRIVRFLES WGIINYLATG SVYRGPRTAS SLIKEETTGE
301: LQLVSAPMKS IDGLILFDRP KCSIQANDIS SLVSTSSAPF VVNHDGDSAN LDEKIWERLS ESSCSFCSQP LPSMHYESQK ETDIALCSDC FHNAKFVTGH
401: SSLDFQRVDA MKDGSDTDGD RWTDQETLLL LEGIEKFNDN WNHIAGHVGT KSKAQCIHHF IRLPVADGLL ENIEVPEASL PSGMQSSGFL HSDSNGSTSG
501: SQPGNQIPFI NSANPVMSLV AFLAAEVGPR VAASCASAAL SVLTREDSRM NAEGIDAMGH GTHLNYGPSS SISSETVKNA ASCGLSAAAT KSKLFADQEE
601: REIQRLSATI INHQLKRLEL KLKQFAEVET MLLKESERLD LMRQQLVTQR IRMLSTRFTS TGGTIPGGSS GMVSNLMNQA SGLRPPLMMP GSVTQSSMPA
701: MYANNMQGHP QMALLQQRQQ MLSFGPRLPL SAINPGSSSS APNMMFNHGM PNSAAPNHHP LLRSPSGDNS NVG

Best Arabidopsis Sequence Match ( AT1G21700.1 )
(BLAST)

001: MPASEDRRGK WKRKKRGGLS AARKPKQEEE DMEEEDEENN NNNNEEMDDV ENADELQQNG GATPDPGLGI GEVVEDSGSR ISDFPAVVKR VVIRPHASVM
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN

Arabidopsis Description

SWI3CSWI/SNF complex subunit SWI3C [Source:UniProtKB/Swiss-Prot;Acc:Q9XI07]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.