Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G119800.1 | Wheat | nucleus | 99.49 | 98.74 |
| TraesCS5A01G113500.1 | Wheat | nucleus | 98.48 | 97.98 |
| HORVU5Hr1G037060.1 | Barley | nucleus, plastid | 96.95 | 92.15 |
| EES15751 | Sorghum | nucleus | 70.39 | 71.58 |
| Zm00001d041847_P002 | Maize | nucleus | 69.89 | 71.15 |
| TraesCS4D01G093900.2 | Wheat | cytosol, nucleus, plastid | 63.79 | 64.86 |
| Os12t0176700-00 | Rice | nucleus | 68.61 | 63.38 |
| GSMUA_Achr6P25400_001 | Banana | nucleus | 56.8 | 57.02 |
| GSMUA_Achr8P30120_001 | Banana | nucleus | 55.53 | 55.95 |
| VIT_18s0001g02160.t01 | Wine grape | nucleus | 26.81 | 47.63 |
| KRH53271 | Soybean | nucleus | 46.12 | 46.24 |
| KRH64632 | Soybean | nucleus | 46.12 | 46.24 |
| Bra017943.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 36.21 | 46.19 |
| KRH17984 | Soybean | nucleus | 43.08 | 44.31 |
| KRH16394 | Soybean | nucleus | 43.46 | 44.07 |
| CDY08183 | Canola | cytosol, nucleus, vacuole | 41.42 | 43.7 |
| Solyc06g060120.2.1 | Tomato | nucleus | 43.2 | 42.98 |
| CDY04665 | Canola | cytosol, nucleus, vacuole | 40.53 | 42.82 |
| CDY58587 | Canola | cytosol, endoplasmic reticulum, nucleus | 41.3 | 42.65 |
| Bra016409.1-P | Field mustard | nucleus | 42.44 | 42.12 |
| CDX96578 | Canola | nucleus | 42.44 | 42.07 |
| AT1G21700.1 | Thale cress | nucleus | 42.31 | 41.26 |
| VIT_18s0001g02190.t01 | Wine grape | nucleus | 18.42 | 40.28 |
| TraesCS6D01G156700.3 | Wheat | plastid | 14.36 | 22.74 |
| TraesCS2D01G337400.1 | Wheat | nucleus | 14.23 | 20.14 |
| TraesCS4D01G053300.2 | Wheat | nucleus | 20.46 | 17.48 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:1.10.10.60 | MapMan:12.4.2.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | InterPro:Homeobox-like_sf | InterPro:IPR007526 | InterPro:IPR017884 |
| InterPro:IPR036388 | PFAM:PF00249 | PFAM:PF04433 | PFAM:PF16495 | PFscan:PS50934 | PFscan:PS51293 |
| PANTHER:PTHR12802 | PANTHER:PTHR12802:SF61 | InterPro:SANT/Myb | InterPro:SANT_dom | SMART:SM00717 | InterPro:SMARCC_C |
| SUPFAM:SSF46689 | InterPro:SWIRM | EnsemblPlantsGene:TraesCS5D01G128700 | EnsemblPlants:TraesCS5D01G128700.1 | InterPro:WH-like_DNA-bd_sf | TIGR:cd00167 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr5D:+:201657947..201669658
Molecular Weight (calculated)
84841.5 Da
IEP (calculated)
6.509
GRAVY (calculated)
-0.421
Length
787 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRKASSSSD AKLKWRKRKR SQDTSPSKQS GGADHSDDSD SAAANDEDDA LHGSANGGET LGARGGDDDT VPDLREAEVL SSAEPVSGFP SATRRTISRV
101: HPSVLAVIAA DRALAAGASC ASAPPAPALE NISHGQLQVL AAMLPDHPSL SNDPDKPSSY VCTVPPLMEC QGVPKQFYSK LLVVPRHADW FSPATVHRLE
201: RQVVPHFFSG KSPGHTPEKY IMLRNKVIVK YLERPSRRLA FAECQGLVTS TAELYDLSRI VRFLDTWGII NYLAAGSVHR GLRLASSLIR EEQTGELQLA
301: SAPLKSIDGL ILFDRPKCSA RAEDIASVAS TSSALEVPNG DTGFADLDEK IWERLSENFC SYCSQPLPSL HYESQKEADI ALCSDCFHDA RFVPGHSSLD
401: FQRVDGTKDG SDNDGDSWTH EETLLLLEGL EKYNDNWNAI AEHVGTKSKA QCIHHFIRIP VEDGLLESIE VPEASVSSRV QSNGFSYSNS NGGISGSVPQ
501: SSQPGQQLPF VNSANPVMSL VAFLASAVGP RIAASCANAA LSVLTRDDSR MCSEGNDVMG QAARPNYDAS SSVSPENVKY AAMCGLSAAA TKCKLFADQE
601: EREIQRLAAT IINHQLKRLE LKLKQFAEVE TLLLKESEQV ERARQNLTAQ RVRFMSARFA SSGGPMPGGS SSTMASNPMN QASPRPPAMP GSMPPASMQA
701: FYGNNMQGHP AQMAFLQQQQ RQQQQQQQQQ QMLSFGPRLP LSAIHPGSSS SAAPSIMFNT GMPSSATPNH HSMLRPPPSG SNNSSFG
101: HPSVLAVIAA DRALAAGASC ASAPPAPALE NISHGQLQVL AAMLPDHPSL SNDPDKPSSY VCTVPPLMEC QGVPKQFYSK LLVVPRHADW FSPATVHRLE
201: RQVVPHFFSG KSPGHTPEKY IMLRNKVIVK YLERPSRRLA FAECQGLVTS TAELYDLSRI VRFLDTWGII NYLAAGSVHR GLRLASSLIR EEQTGELQLA
301: SAPLKSIDGL ILFDRPKCSA RAEDIASVAS TSSALEVPNG DTGFADLDEK IWERLSENFC SYCSQPLPSL HYESQKEADI ALCSDCFHDA RFVPGHSSLD
401: FQRVDGTKDG SDNDGDSWTH EETLLLLEGL EKYNDNWNAI AEHVGTKSKA QCIHHFIRIP VEDGLLESIE VPEASVSSRV QSNGFSYSNS NGGISGSVPQ
501: SSQPGQQLPF VNSANPVMSL VAFLASAVGP RIAASCANAA LSVLTRDDSR MCSEGNDVMG QAARPNYDAS SSVSPENVKY AAMCGLSAAA TKCKLFADQE
601: EREIQRLAAT IINHQLKRLE LKLKQFAEVE TLLLKESEQV ERARQNLTAQ RVRFMSARFA SSGGPMPGGS SSTMASNPMN QASPRPPAMP GSMPPASMQA
701: FYGNNMQGHP AQMAFLQQQQ RQQQQQQQQQ QMLSFGPRLP LSAIHPGSSS SAAPSIMFNT GMPSSATPNH HSMLRPPPSG SNNSSFG
001: MPASEDRRGK WKRKKRGGLS AARKPKQEEE DMEEEDEENN NNNNEEMDDV ENADELQQNG GATPDPGLGI GEVVEDSGSR ISDFPAVVKR VVIRPHASVM
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN
Arabidopsis Description
SWI3CSWI/SNF complex subunit SWI3C [Source:UniProtKB/Swiss-Prot;Acc:Q9XI07]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.