CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH51554
KRH53340
KRH60872
KRH64580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G21700.1	KRH51554	AT2G33610.1	12140326
AT1G21700.1	KRH60872	AT2G33610.1	12140326
AT1G21700.1	KRH51554	AT2G33610.1	16845477
AT1G21700.1	KRH60872	AT2G33610.1	16845477
AT1G21700.1	KRH53340	AT2G47620.1	16055636
AT1G21700.1	KRH64580	AT2G47620.1	16055636

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16394	Soybean	nucleus	90.07	88.79
KRH64632	Soybean	nucleus	72.16	70.32
KRH53271	Soybean	nucleus	71.63	69.81
VIT_18s0001g02160.t01	Wine grape	nucleus	34.77	60.05
Bra017943.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	41.96	52.03
Solyc06g060120.2.1	Tomato	nucleus	52.94	51.2
CDY04665	Canola	cytosol, nucleus, vacuole	47.71	48.99
CDY08183	Canola	cytosol, nucleus, vacuole	47.58	48.79
CDY58587	Canola	cytosol, endoplasmic reticulum, nucleus	47.97	48.16
Bra016409.1-P	Field mustard	nucleus	49.15	47.41
CDX96578	Canola	nucleus	49.15	47.36
AT1G21700.1	Thale cress	nucleus	49.8	47.21
VIT_18s0001g02190.t01	Wine grape	nucleus	21.18	45.0
GSMUA_Achr8P30120_001	Banana	nucleus	45.88	44.94
Os11t0183700-01	Rice	mitochondrion	45.88	44.77
TraesCS4B01G097500.1	Wheat	cytosol, mitochondrion, nucleus	27.97	43.85
GSMUA_Achr6P25400_001	Banana	nucleus	44.58	43.49
OQU83031	Sorghum	cytosol, mitochondrion, nucleus, plastid	44.05	43.43
HORVU4Hr1G017950.27	Barley	nucleus	30.2	43.42
TraesCS4A01G218700.1	Wheat	cytosol, nucleus, plastid	24.71	43.35
TraesCS4D01G093900.2	Wheat	cytosol, nucleus, plastid	43.66	43.15
TraesCS5D01G128700.1	Wheat	nucleus	44.31	43.08
TraesCS5B01G119800.1	Wheat	nucleus	44.31	42.75
TraesCS5A01G113500.1	Wheat	nucleus	44.18	42.73
EES15751	Sorghum	nucleus	43.14	42.64
Zm00001d041847_P002	Maize	nucleus	43.01	42.56
Zm00001d000110_P003	Maize	mitochondrion	43.53	42.47
HORVU5Hr1G037060.1	Barley	nucleus, plastid	44.05	40.7
Os12t0176700-00	Rice	nucleus	41.05	36.85
TraesCS4B01G097600.1	Wheat	nucleus	9.8	32.89
KRH53340	Soybean	nucleus	15.82	23.14
KRH64580	Soybean	nucleus	15.56	22.58
KRH60872	Soybean	nucleus	13.86	21.9
KRH51554	Soybean	nucleus	13.86	21.59
KRH24488	Soybean	nucleus	23.53	17.72
KRH29482	Soybean	nucleus	23.4	17.1

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	EntrezGene:732600	EMBL:ACUP02008019	ncoils:Coil
EnsemblPlantsGene:GLYMA_13G031300	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf	UniProt:I1LXG5
InterPro:IPR007526	InterPro:IPR017884	InterPro:IPR036388	EnsemblPlants:KRH17984	ProteinID:KRH17984	ProteinID:KRH17984.1
PFAM:PF00249	PFAM:PF04433	PFAM:PF16495	PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802
PANTHER:PTHR12802:SF61	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00717	InterPro:SMARCC_C	SUPFAM:SSF46689
InterPro:SWIRM	UniParc:UPI000295CD42	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr13:+:10193945..10199895

Molecular Weight (calculated)

83869.8 Da

IEP (calculated)

6.367

GRAVY (calculated)

-0.594

Length

765 amino acids

Sequence
(BLAST)

001: MSPSPSFPSE NRTKWRKKRK RESYKRNQKR HGGDEDDSDD DNEPDDNDDS DDQFRSPSAQ FADPQRVEIE VVSPDGVQIS RFPPAIRRAV TRPHAAVTAI
101: AALEAGGDKS QHSSIPVLEN VSHGQLQALS AVSADFFVIA PPSVLKGSGV VKRFGSRVLV VPMHSDWFSP ASVHRLERQA VPHFFSGKSP DHTPEKYMEC
201: RNYIVARYME DPGKRITVSS CQGLSVGVGN EDLTRIVRFL DHWGIINYCA PGPSHENSDN ETYLKEDTSG AICVPSAGLR SIDSLVKFDK PKCKFKADEI
301: YSSRTMHNTD ISDLDERIRE HLSENYCHYC SCSLPVVYYQ SQKEVDILLC TDCFHDGRFV TGHSSIDFIR VDSTTDFGDL DGDSWTDQET LLLLEAVEVY
401: NENWNEIAEH VGTKSKAQCI LHFLRLPVED GKLENINVSS LSLSSIVKNQ EDNGRLHCCS NGDSAGPVHN SQDSDGRLPF ANSGNPVMAL VAFLASAVGP
501: RVAATCAHAA LAALSRNNSG STSHIEAPDN DNRTNSESVH NRDGGHDGEV ANSNQKNEDK SKVLGSCGQN EGGSTLLSAE KIKDAAKEGL SAAAMKAKLF
601: ADHEEREIQR LCANIVNNKL KRLELKLKQF AEIETQLMRE CEQVEKVKQR LASDRSHIVS TRLGNGGTTP PMNVAGAGPS MVNNNSNGRQ QMISASSSQP
701: SISGYGNSQP VHPHMSFVPR PSMFGLGQRL PLSMIQQQHS ASSDPMFNGP GNLQPTPNHS VSRPV

Best Arabidopsis Sequence Match ( AT1G21700.1 )
(BLAST)

001: MPASEDRRGK WKRKKRGGLS AARKPKQEEE DMEEEDEENN NNNNEEMDDV ENADELQQNG GATPDPGLGI GEVVEDSGSR ISDFPAVVKR VVIRPHASVM
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN

Arabidopsis Description

SWI3CSWI/SNF complex subunit SWI3C [Source:UniProtKB/Swiss-Prot;Acc:Q9XI07]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.