CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES04686
EES10999

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G21700.1	EES04686	AT2G33610.1	12140326
AT1G21700.1	EES04686	AT2G33610.1	16845477
AT1G21700.1	EES10999	AT2G47620.1	16055636

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041847_P002	Maize	nucleus	91.6	91.72
TraesCS5D01G128700.1	Wheat	nucleus	71.58	70.39
TraesCS5A01G113500.1	Wheat	nucleus	71.32	69.79
TraesCS5B01G119800.1	Wheat	nucleus	71.45	69.74
OQU83031	Sorghum	cytosol, mitochondrion, nucleus, plastid	66.8	66.62
HORVU5Hr1G037060.1	Barley	nucleus, plastid	71.19	66.55
Os12t0176700-00	Rice	nucleus	62.66	56.92
GSMUA_Achr6P25400_001	Banana	nucleus	56.2	55.48
GSMUA_Achr8P30120_001	Banana	nucleus	55.43	54.93
VIT_18s0001g02160.t01	Wine grape	nucleus	26.61	46.5
KRH64632	Soybean	nucleus	46.12	45.48
Bra017943.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	35.92	45.06
KRH53271	Soybean	nucleus	45.61	44.97
KRH16394	Soybean	nucleus	43.67	43.56
KRH17984	Soybean	nucleus	42.64	43.14
CDY08183	Canola	cytosol, nucleus, vacuole	41.47	43.03
CDY58587	Canola	cytosol, endoplasmic reticulum, nucleus	41.99	42.65
Solyc06g060120.2.1	Tomato	nucleus	43.41	42.48
CDY04665	Canola	cytosol, nucleus, vacuole	40.57	42.15
Bra016409.1-P	Field mustard	nucleus	42.89	41.87
CDX96578	Canola	nucleus	42.89	41.81
AT1G21700.1	Thale cress	nucleus	43.54	41.76
VIT_18s0001g02190.t01	Wine grape	nucleus	18.22	39.17
EES04686	Sorghum	plastid	14.73	22.89
EES10999	Sorghum	nucleus	13.95	19.46
EER93546	Sorghum	nucleus	18.99	16.17
EES10369	Sorghum	nucleus	17.83	15.28

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	EntrezGene:8079896	UniProt:C5YST2	ncoils:Coil
EnsemblPlants:EES15751	ProteinID:EES15751	ProteinID:EES15751.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR017884	InterPro:IPR036388	PFAM:PF00249	PFAM:PF04433
PFAM:PF16495	PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF61	InterPro:SANT/Myb
InterPro:SANT_dom	SMART:SM00717	InterPro:SMARCC_C	EnsemblPlantsGene:SORBI_3008G057000	SUPFAM:SSF46689	InterPro:SWIRM
unigene:Sbi.11568	UniParc:UPI0001A87F76	InterPro:WH-like_DNA-bd_sf	RefSeq:XP_002441913.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:+:5902861..5910322

Molecular Weight (calculated)

83238.7 Da

IEP (calculated)

7.043

GRAVY (calculated)

-0.325

Length

774 amino acids

Sequence
(BLAST)

001: MPRKASSNSD ARAKWRKRKR AAASASPSKQ PGDHSDDSDT AAAANGDDEA SRATSANGGR GTLAGGGGGG DDDPALDLRA AEVLSPNAEL VSTFPAAVRR
101: AVGRPHPSVL AVIAAERAAA SSDGAPATPA PVPVLENISH GQLQVISAML PDHPSLSYEP DKPSTYVCTP PPLMEGCGVH KQFYGKLHIV PRHSDWFVPT
201: TVHRLERQVV PQYFSGKSQG QTPEKYMMLR NKVIAKYLER PGKRLVFAEC QGLVTSTPEL YDLSRIVRFL ESWGIINYLA TGSVHRGLRM PASLIKEEIT
301: GELQLVSAPM KSIDGLILFD RPKCSIRADD LSSSVSTSSA PFVANGDADS ANLDEKIWEL LSESSCRYCS QPLPSLHYVS QKEADIALCS DCFHNAKFVI
401: GHSSLDFQRV DVMKDGSDTD GDRWTDQETL LLLEGIEKFN DNWNHIAGHV GTKSKAQCIH HFITLPVEDG LLENIEVPEA SLPSRMQSNG FLHSDSNGST
501: SGSQPGNQIP FINSANPVMS LVAFLAAEVG PRVAASCASA ALSVLTRDDS RMHAEGIDAM GHATHLNYGP SSSISSETVK NAAICGLSAA ATKSKLFADQ
601: EEREIQRLSA TIINHQLKRL ELKLKQFAEV ETMLLKESER LEVMRQQMVT QRVRLLSTRF TSTGGTIPGG SSSMVANPMN QATGLRPLMM PGTVSQSSVP
701: AMYANNMQGH PQMALLQQRQ QMLSFGPRLP LSAINPGSSS SAPNMMFNPG MPNSAAPNHH PLLRSPSGNN SNVG

Best Arabidopsis Sequence Match ( AT1G21700.1 )
(BLAST)

001: MPASEDRRGK WKRKKRGGLS AARKPKQEEE DMEEEDEENN NNNNEEMDDV ENADELQQNG GATPDPGLGI GEVVEDSGSR ISDFPAVVKR VVIRPHASVM
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN

Arabidopsis Description

SWI3CSWI/SNF complex subunit SWI3C [Source:UniProtKB/Swiss-Prot;Acc:Q9XI07]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.