Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
25464976
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g097450.2.1 | |
| Solyc04g082760.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G21700.1 | Solyc04g082760.2.1 | AT2G33610.1 | 12140326 |
| AT1G21700.1 | Solyc04g082760.2.1 | AT2G33610.1 | 16845477 |
| AT1G21700.1 | Solyc03g097450.2.1 | AT2G47620.1 | 16055636 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_18s0001g02160.t01 | Wine grape | nucleus | 34.39 | 61.4 |
| KRH64632 | Soybean | nucleus | 54.99 | 55.41 |
| KRH53271 | Soybean | nucleus | 54.11 | 54.52 |
| KRH17984 | Soybean | nucleus | 51.2 | 52.94 |
| KRH16394 | Soybean | nucleus | 50.82 | 51.8 |
| Bra017943.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 39.82 | 51.05 |
| CDY08183 | Canola | cytosol, nucleus, vacuole | 47.28 | 50.13 |
| CDY04665 | Canola | cytosol, nucleus, vacuole | 47.03 | 49.93 |
| AT1G21700.1 | Thale cress | nucleus | 50.82 | 49.81 |
| CDY58587 | Canola | cytosol, endoplasmic reticulum, nucleus | 47.41 | 49.21 |
| CDX96578 | Canola | nucleus | 48.67 | 48.49 |
| Bra016409.1-P | Field mustard | nucleus | 48.55 | 48.42 |
| VIT_18s0001g02190.t01 | Wine grape | nucleus | 20.99 | 46.11 |
| GSMUA_Achr8P30120_001 | Banana | nucleus | 44.75 | 45.33 |
| OQU83031 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 43.87 | 44.72 |
| Os11t0183700-01 | Rice | mitochondrion | 44.25 | 44.64 |
| GSMUA_Achr6P25400_001 | Banana | nucleus | 43.87 | 44.26 |
| TraesCS4B01G097500.1 | Wheat | cytosol, mitochondrion, nucleus | 27.05 | 43.85 |
| TraesCS4A01G218700.1 | Wheat | cytosol, nucleus, plastid | 24.02 | 43.58 |
| EES15751 | Sorghum | nucleus | 42.48 | 43.41 |
| Zm00001d000110_P003 | Maize | mitochondrion | 42.98 | 43.37 |
| Zm00001d041847_P002 | Maize | nucleus | 42.35 | 43.34 |
| HORVU4Hr1G017950.27 | Barley | nucleus | 29.08 | 43.23 |
| TraesCS5D01G128700.1 | Wheat | nucleus | 42.98 | 43.2 |
| TraesCS5B01G119800.1 | Wheat | nucleus | 42.98 | 42.88 |
| TraesCS5A01G113500.1 | Wheat | nucleus | 42.86 | 42.86 |
| TraesCS4D01G093900.2 | Wheat | cytosol, nucleus, plastid | 41.09 | 41.99 |
| HORVU5Hr1G037060.1 | Barley | nucleus, plastid | 43.24 | 41.3 |
| TraesCS4B01G097600.1 | Wheat | nucleus | 11.13 | 38.6 |
| Os12t0176700-00 | Rice | nucleus | 38.31 | 35.56 |
| Solyc04g082760.2.1 | Tomato | nucleus | 12.77 | 20.65 |
| Solyc03g097450.2.1 | Tomato | nucleus | 14.29 | 19.72 |
| Solyc01g109510.2.1 | Tomato | nucleus | 20.99 | 17.57 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:1.10.10.60 | MapMan:12.4.2.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Homeobox-like_sf | InterPro:IPR007526 | InterPro:IPR017884 | InterPro:IPR036388 | UniProt:K4C6J3 |
| PFAM:PF00249 | PFAM:PF04433 | PFAM:PF16495 | PFscan:PS50934 | PFscan:PS51293 | PANTHER:PTHR12802 |
| PANTHER:PTHR12802:SF61 | InterPro:SANT/Myb | InterPro:SANT_dom | SMART:SM00717 | InterPro:SMARCC_C | SUPFAM:SSF46689 |
| InterPro:SWIRM | EnsemblPlantsGene:Solyc06g060120.2 | EnsemblPlants:Solyc06g060120.2.1 | UniParc:UPI0002765F69 | InterPro:WH-like_DNA-bd_sf | SEG:seg |
Description
SWI/SNF complex subunit SWI3C [Source:Projected from Arabidopsis thaliana (AT1G21700) UniProtKB/Swiss-Prot;Acc:Q9XI07]
Coordinates
chr6:-:38051572..38070007
Molecular Weight (calculated)
86602.5 Da
IEP (calculated)
6.106
GRAVY (calculated)
-0.554
Length
791 amino acids
Sequence
(BLAST)
(BLAST)
001: MPASSSETRN RWRKRKREPL ISRKSKNQHD DDGFEDEEDE EDIEQQEMED EHQNPNNSVD RSYSSVELVS ESRDRISEFP LVVRRAVTRP HSSVLNIVAT
101: EKAGLSGESR QNGLVLENIS YGQLQALSAV PVDSHSLLTE ERGGEGSGSG SYVITPPQIL PGRGVIKHYG TAGRIHVVPM HADWFSPNTV HRLERQVVPH
201: FFSGKSAEHT PEKYMECRNC IVAKYMESPV KHLSVDDCHE IVGGISADDV TRIARFLDHW GIINYCAVPP KDEAQKDGTY LYEDTNGDLC VPAAGLKSID
301: SLVQFDKPKC RLKAKDIYPE LERDCDDDSD FDNSIREILS EIRCNCCSRP VSLAHYQSQK EMDILLCLDC FHEGRFIAGH SSLDFVKVSS MKDYGDLDGD
401: TWTDQETLLL LEGMQLYNEN WNQIAEHVGT KSKAQCILHF VRLPLDGAAL DNIELPGASG PSSSKTGEDR NKSHSTLNGN LAGPSTGNLD SDSKFPFENC
501: GNPVMSLVAF LASAVGPRVA AACAHASLAA LSKDDTLTAS QNMTQMDGST TNNGISVGRM PGKNESPHGD VGSSYQRKDD KAAGQGPWGQ HDAGGTPLST
601: ESVRAAAKVG LAAAAVKSKL FADHEEREIQ RLSANIVNHQ LKRLELKLKQ FAEVETLLMK ECEQLERTRQ RFFGERARIM TTQPGSVRVS RPMGVSGAGA
701: AVVNNTGNSR QQVSGPPQQN FIAGYGNNQP MHPQMSFMQQ QGIYGFGPRL PLSAIHPSSS TPSMFNAPAS SQPALSHSML RPVSGTKTGL G
101: EKAGLSGESR QNGLVLENIS YGQLQALSAV PVDSHSLLTE ERGGEGSGSG SYVITPPQIL PGRGVIKHYG TAGRIHVVPM HADWFSPNTV HRLERQVVPH
201: FFSGKSAEHT PEKYMECRNC IVAKYMESPV KHLSVDDCHE IVGGISADDV TRIARFLDHW GIINYCAVPP KDEAQKDGTY LYEDTNGDLC VPAAGLKSID
301: SLVQFDKPKC RLKAKDIYPE LERDCDDDSD FDNSIREILS EIRCNCCSRP VSLAHYQSQK EMDILLCLDC FHEGRFIAGH SSLDFVKVSS MKDYGDLDGD
401: TWTDQETLLL LEGMQLYNEN WNQIAEHVGT KSKAQCILHF VRLPLDGAAL DNIELPGASG PSSSKTGEDR NKSHSTLNGN LAGPSTGNLD SDSKFPFENC
501: GNPVMSLVAF LASAVGPRVA AACAHASLAA LSKDDTLTAS QNMTQMDGST TNNGISVGRM PGKNESPHGD VGSSYQRKDD KAAGQGPWGQ HDAGGTPLST
601: ESVRAAAKVG LAAAAVKSKL FADHEEREIQ RLSANIVNHQ LKRLELKLKQ FAEVETLLMK ECEQLERTRQ RFFGERARIM TTQPGSVRVS RPMGVSGAGA
701: AVVNNTGNSR QQVSGPPQQN FIAGYGNNQP MHPQMSFMQQ QGIYGFGPRL PLSAIHPSSS TPSMFNAPAS SQPALSHSML RPVSGTKTGL G
001: MPASEDRRGK WKRKKRGGLS AARKPKQEEE DMEEEDEENN NNNNEEMDDV ENADELQQNG GATPDPGLGI GEVVEDSGSR ISDFPAVVKR VVIRPHASVM
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN
Arabidopsis Description
SWI3CSWI/SNF complex subunit SWI3C [Source:UniProtKB/Swiss-Prot;Acc:Q9XI07]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.