Factsheet for TraesCS4D01G093900.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

mitochondrion 2
cytosol 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2B01G356600.1
TraesCS2D01G337400.1
TraesCS6A01G167800.1
TraesCS6B01G195400.1
TraesCS6D01G156700.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G21700.1	TraesCS6A01G167800.1	AT2G33610.1	12140326
AT1G21700.1	TraesCS6B01G195400.1	AT2G33610.1	12140326
AT1G21700.1	TraesCS6D01G156700.3	AT2G33610.1	12140326
AT1G21700.1	TraesCS6A01G167800.1	AT2G33610.1	16845477
AT1G21700.1	TraesCS6B01G195400.1	AT2G33610.1	16845477
AT1G21700.1	TraesCS6D01G156700.3	AT2G33610.1	16845477
AT1G21700.1	TraesCS2B01G356600.1	AT2G47620.1	16055636
AT1G21700.1	TraesCS2D01G337400.1	AT2G47620.1	16055636

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G218700.1	Wheat	cytosol, nucleus, plastid	53.36	94.72
TraesCS4B01G097500.1	Wheat	cytosol, mitochondrion, nucleus	59.69	94.67
HORVU4Hr1G017950.27	Barley	nucleus	61.37	89.29
Os11t0183700-01	Rice	mitochondrion	73.77	72.83
OQU83031	Sorghum	cytosol, mitochondrion, nucleus, plastid	71.83	71.65
Zm00001d000110_P003	Maize	mitochondrion	70.41	69.52
TraesCS5D01G128700.1	Wheat	nucleus	64.86	63.79
TraesCS4B01G097600.1	Wheat	nucleus	16.67	56.58
GSMUA_Achr6P25400_001	Banana	nucleus	54.91	54.21
GSMUA_Achr8P30120_001	Banana	nucleus	54.39	53.91
KRH64632	Soybean	nucleus	45.09	44.46
KRH53271	Soybean	nucleus	44.83	44.2
KRH17984	Soybean	nucleus	43.15	43.66
Bra017943.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	34.5	43.27
KRH16394	Soybean	nucleus	42.76	42.65
CDY08183	Canola	cytosol, nucleus, vacuole	40.18	41.69
VIT_18s0001g02160.t01	Wine grape	nucleus	23.64	41.31
Solyc06g060120.2.1	Tomato	nucleus	41.99	41.09
CDY04665	Canola	cytosol, nucleus, vacuole	39.53	41.07
CDY58587	Canola	cytosol, endoplasmic reticulum, nucleus	40.18	40.81
AT1G21700.1	Thale cress	nucleus	42.38	40.64
Bra016409.1-P	Field mustard	nucleus	41.47	40.48
CDX96578	Canola	nucleus	41.47	40.43
VIT_18s0001g02190.t01	Wine grape	nucleus	18.48	39.72
TraesCS6D01G156700.3	Wheat	plastid	14.34	22.33
TraesCS2D01G337400.1	Wheat	nucleus	13.95	19.42
TraesCS4D01G053300.2	Wheat	nucleus	19.12	16.07

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR017884
InterPro:IPR036388	PFAM:PF00249	PFAM:PF04433	PFAM:PF16495	PFscan:PS50934	PFscan:PS51293
PANTHER:PTHR12802	PANTHER:PTHR12802:SF61	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00717	InterPro:SMARCC_C
SUPFAM:SSF46689	InterPro:SWIRM	EnsemblPlantsGene:TraesCS4D01G093900	EnsemblPlants:TraesCS4D01G093900.2	InterPro:WH-like_DNA-bd_sf	TIGR:cd00167
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:69396692..69428058

Molecular Weight (calculated)

83952.0 Da

IEP (calculated)

6.422

GRAVY (calculated)

-0.345

Length

774 amino acids

Sequence
(BLAST)

001: MPRKASCTPD SRTKWRKRKR NSDALPLPSA AADHSDDSDS AADNDDDDTA VPSPAVDNAD DEILAGAAAR DPVPDLREAE LLSSAEVISA FPAATRRTVN
101: RPHPSVMAVV AAERSAYVGD VSAAAPPVLE NISHGQLQVL SVALPDHPSL STDPDKPSSY VCTPPPLTEG HGVHKQFQGR LHVVPKHSDW FSPGAVHRLE
201: RQVVPHFFTG KSPGHTPEKF IMLRNKIIAK YLENPGKRLA FAECQGFVVN TGELYDLSRI VRFLDTWGII NYLAVGLVHR GLRVAASLLI EEPAGELQLL
301: TAPLKSIDGL VLFDRPKCSL QADDISSLAS SSSNSEVVDF DAGAEFTELE GKIRERLSES YCSYCSQSLR SLHYQLQKEA DIAICSDCFH DARYVIGHSC
401: LDFQRVDGAK DGSENEGDNW TDQETLLMLE GIEKHKDNWN SIADHVGTKS KAQCIYHFIR LPVEDSLLEN IEVPDASMPF RPQSNGYPHS DSNGSTSGNL
501: PQSIQHGNEL PFISSSNPVM SLVAFLASAI GPRIAASCAS AALSALTRDD DPRVHGAHPN FCGHNGASSS ISLENVKHAT LCGLSAAAIK SKLFADQEER
601: EIQRLVATVI NHQLKRLELK LKQFAEVETL VLKECEQVER AKQRISAGRI QAMRACSNPP ETSLPTSGGS TMSPNPTNIS PRPLAMPRSM AEATVPAAYA
701: NYMQGQGHPQ MPFVQRRPQM LSFGPRLPFT AIQTQPVAQA PNIMFSSGAM PGSVTPNHHP HLLRSSSSGN TTLG

Best Arabidopsis Sequence Match ( AT1G21700.1 )
(BLAST)

001: MPASEDRRGK WKRKKRGGLS AARKPKQEEE DMEEEDEENN NNNNEEMDDV ENADELQQNG GATPDPGLGI GEVVEDSGSR ISDFPAVVKR VVIRPHASVM
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN

Arabidopsis Description

SWI3CSWI/SNF complex subunit SWI3C [Source:UniProtKB/Swiss-Prot;Acc:Q9XI07]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.