Factsheet for Os11t0183700-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 5
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0194000-01
Os04t0480300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G21700.1	Os02t0194000-01	AT2G33610.1	12140326
AT1G21700.1	Os02t0194000-01	AT2G33610.1	16845477
AT1G21700.1	Os04t0480300-01	AT2G47620.1	16055636

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU83031	Sorghum	cytosol, mitochondrion, nucleus, plastid	78.57	79.38
TraesCS4A01G218700.1	Wheat	cytosol, nucleus, plastid	42.98	77.29
TraesCS4B01G097500.1	Wheat	cytosol, mitochondrion, nucleus	47.96	77.05
Zm00001d000110_P003	Maize	mitochondrion	76.91	76.91
TraesCS4D01G093900.2	Wheat	cytosol, nucleus, plastid	72.83	73.77
HORVU4Hr1G017950.27	Barley	nucleus	50.0	73.68
GSMUA_Achr8P30120_001	Banana	nucleus	57.4	57.62
GSMUA_Achr6P25400_001	Banana	nucleus	57.27	57.27
Os12t0176700-00	Rice	nucleus	61.1	56.22
TraesCS4B01G097600.1	Wheat	nucleus	15.43	53.07
KRH64632	Soybean	nucleus	47.7	47.64
KRH53271	Soybean	nucleus	47.07	47.01
Bra017943.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	36.73	46.68
VIT_18s0001g02160.t01	Wine grape	nucleus	26.15	46.28
KRH17984	Soybean	nucleus	44.77	45.88
KRH16394	Soybean	nucleus	44.64	45.1
CDY08183	Canola	cytosol, nucleus, vacuole	42.73	44.91
Solyc06g060120.2.1	Tomato	nucleus	44.64	44.25
CDY58587	Canola	cytosol, endoplasmic reticulum, nucleus	42.86	44.09
CDY04665	Canola	cytosol, nucleus, vacuole	41.71	43.89
Bra016409.1-P	Field mustard	nucleus	43.49	43.0
CDX96578	Canola	nucleus	43.49	42.95
AT1G21700.1	Thale cress	nucleus	44.13	42.87
VIT_18s0001g02190.t01	Wine grape	nucleus	18.62	40.56
Os02t0194000-01	Rice	nucleus	12.24	23.76
Os04t0480300-01	Rice	cytosol	14.67	20.54
Os04t0110300-02	Rice	plasma membrane	19.26	17.04
Os03t0722100-01	Rice	cytosol, nucleus	10.71	15.7
Os04t0480400-01	Rice	nucleus	5.23	14.91

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	EntrezGene:4349954	ProteinID:AAX95027.1	ProteinID:ABA91812.1
EMBL:AK066941	ProteinID:BAF27756.1	ProteinID:BAT12964.1	ProteinID:BAT12965.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR017884	InterPro:IPR036388
EnsemblPlantsGene:Os11g0183700	EnsemblPlants:Os11t0183700-01	PFAM:PF00249	PFAM:PF04433	PFAM:PF16495	PFscan:PS50934
PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF61	UniProt:Q53KK6	InterPro:SANT/Myb	InterPro:SANT_dom
SMART:SM00717	InterPro:SMARCC_C	SUPFAM:SSF46689	InterPro:SWIRM	UniParc:UPI0000509639	InterPro:WH-like_DNA-bd_sf
RefSeq:XP_015617508.1	SEG:seg	:	:	:	:

Description

SWIRM domain-containing protein OsSWI3CMyb, DNA-binding domain containing protein. (Os11t0183700-01);Hypothetical conserved gene. (Os11t0183700-02)

Coordinates

chr11:+:4220839..4229441

Molecular Weight (calculated)

85068.0 Da

IEP (calculated)

5.874

GRAVY (calculated)

-0.416

Length

784 amino acids

Sequence
(BLAST)

001: MPRKASSTSD SRLKWRKWKR NPTASPSPSN RSSAAAAAAD HSDDSDSAAV NEDDDSAVPE DADDETLAGA EDPVLDLREA EVLPSAEPVS AFPVATRRVV
101: NRPHPSVLAV IAAERSACAG EGSAAVAAAP VLENISYGQQ QVLSGVLPDH ASLATDTDKP STYVCTPPNL MEGHGVTKQF QGRLHVVPKH SDWFSPGIVH
201: RLERQVVPQF FSGKSPGNTP EKYMLLRNKV IAKYLENPSK RLAFAECQGL VANTAELYDL SRIVRFLDTW GIINYLASGS VHRGLRMATS LLREEPTGEL
301: QLLTAPLKSI DGLILFDRPK CNLQAEDISS LASNSEVVDF DAGLAELDGK IRERLSESSC SYCLQPLTSL HYQSLKEADI ALCSDCFHDA RYITGHSSLD
401: FQRIDGDNDR SENDGDSWTD QETLLLLEGI EKYNDNWNNI AEHVGTKSKA QCIYHFIRLP VEDGLLENIE VPDASVPFRA ETNGYPHLDC NGSTSGNLPQ
501: KIPPDNQLPF INSSNPVMSL VGFLASAMGP RVAASCASAA LSVLTVDDDS RVNSEGICSD SRGQGPHPNF RDHNGGVSSS ISPEKVKHAA MCGLSAAATK
601: AKLFADQEER EIQRLTATVI NHQLKRLELK LKQFAEVETL LLKECEQVER IRQRIASDRV RIVSTRLASP GNSLPGGSTS TMSSNPMSMS PRPMGVPGSM
701: PQSSMPAPFA NNMQGHGHPQ MAFLQQQQRQ QMLSFGPRLP LSAIQTQPSP QTSNIMFNPG MPNSVTPNHH QLLRSSSGNN SSVG

Best Arabidopsis Sequence Match ( AT1G21700.1 )
(BLAST)

001: MPASEDRRGK WKRKKRGGLS AARKPKQEEE DMEEEDEENN NNNNEEMDDV ENADELQQNG GATPDPGLGI GEVVEDSGSR ISDFPAVVKR VVIRPHASVM
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN

Arabidopsis Description

SWI3CSWI/SNF complex subunit SWI3C [Source:UniProtKB/Swiss-Prot;Acc:Q9XI07]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.