Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0194000-01 | |
| Os04t0480300-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G21700.1 | Os02t0194000-01 | AT2G33610.1 | 12140326 |
| AT1G21700.1 | Os02t0194000-01 | AT2G33610.1 | 16845477 |
| AT1G21700.1 | Os04t0480300-01 | AT2G47620.1 | 16055636 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G128700.1 | Wheat | nucleus | 63.38 | 68.61 |
| TraesCS5B01G119800.1 | Wheat | nucleus | 63.38 | 68.1 |
| TraesCS5A01G113500.1 | Wheat | nucleus | 63.03 | 67.89 |
| HORVU5Hr1G037060.1 | Barley | nucleus, plastid | 62.56 | 64.37 |
| Zm00001d041847_P002 | Maize | nucleus | 56.92 | 62.74 |
| EES15751 | Sorghum | nucleus | 56.92 | 62.66 |
| Os11t0183700-01 | Rice | mitochondrion | 56.22 | 61.1 |
| GSMUA_Achr6P25400_001 | Banana | nucleus | 47.89 | 52.04 |
| GSMUA_Achr8P30120_001 | Banana | nucleus | 47.07 | 51.34 |
| KRH64632 | Soybean | nucleus | 38.97 | 42.29 |
| KRH53271 | Soybean | nucleus | 38.73 | 42.04 |
| Bra017943.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 30.4 | 41.98 |
| KRH17984 | Soybean | nucleus | 36.85 | 41.05 |
| CDY08183 | Canola | cytosol, nucleus, vacuole | 35.92 | 41.02 |
| VIT_18s0001g02160.t01 | Wine grape | nucleus | 21.24 | 40.86 |
| KRH16394 | Soybean | nucleus | 37.21 | 40.85 |
| CDY58587 | Canola | cytosol, endoplasmic reticulum, nucleus | 36.27 | 40.55 |
| CDY04665 | Canola | cytosol, nucleus, vacuole | 34.98 | 40.0 |
| Bra016409.1-P | Field mustard | nucleus | 36.62 | 39.34 |
| CDX96578 | Canola | nucleus | 36.62 | 39.29 |
| VIT_18s0001g02190.t01 | Wine grape | nucleus | 16.55 | 39.17 |
| AT1G21700.1 | Thale cress | nucleus | 36.5 | 38.54 |
| Solyc06g060120.2.1 | Tomato | nucleus | 35.56 | 38.31 |
| Os02t0194000-01 | Rice | nucleus | 9.86 | 20.79 |
| Os04t0480300-01 | Rice | cytosol | 13.26 | 20.18 |
| Os04t0480400-01 | Rice | nucleus | 5.52 | 17.09 |
| Os04t0110300-02 | Rice | plasma membrane | 16.67 | 16.03 |
| Os03t0722100-01 | Rice | cytosol, nucleus | 9.15 | 14.58 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:1.10.10.60 | MapMan:12.4.2.1 | UniProt:A0A0P0Y7F6 | ProteinID:BAT16112.1 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:Homeobox-like_sf | InterPro:IPR007526 | InterPro:IPR017884 |
| InterPro:IPR036388 | EnsemblPlantsGene:Os12g0176700 | EnsemblPlants:Os12t0176700-00 | PFAM:PF00249 | PFAM:PF04433 | PFAM:PF16495 |
| PFscan:PS50934 | PFscan:PS51293 | PANTHER:PTHR12802 | PANTHER:PTHR12802:SF61 | InterPro:SANT/Myb | InterPro:SANT_dom |
| SMART:SM00717 | InterPro:SMARCC_C | SUPFAM:SSF46689 | InterPro:SWIRM | UniParc:UPI000393878C | InterPro:WH-like_DNA-bd_sf |
| SEG:seg | : | : | : | : | : |
Description
SWIRM domain-containing protein CHB701Similar to SWIRM domain containing protein, expressed. (Os12t0176700-00)
Coordinates
chr12:+:3879249..3885072
Molecular Weight (calculated)
91293.5 Da
IEP (calculated)
6.658
GRAVY (calculated)
-0.362
Length
852 amino acids
Sequence
(BLAST)
(BLAST)
001: FDWIAKAEKV GRNSNRGCST PFLTRFARAS LAGNTPSSPT AAAAAAAASS ATGAGDDASS QGHLLRRYVP PLLASHFPLA GTSSRADAGG QNPTSPVDAR
101: AKWRKRKRNA NTSAADHSDD SDSAVAAAAN DDNDDDDAAL HAATAAANGG GGTLGGGDDD PVVDLREAEV HPTAIERVSA FPPAFRRVVN RLHPSVLAVM
201: AAERAAAAAG AGAGGGGAAV PALENISHGQ LQVLSSVLPD HPSLSNDPDK PSSYVCTPPL LMECRGVAKQ FDGKLLMVPK HSDWFLPMTV HRLERQVLPQ
301: FFSGKSPGHT PEKYIMLRNR VITTYLERPA RRLAFSECQG LVTSTPELYD LSRIVRFLDA WGIINYLAAG SVQRGLRMAA TLIREEPTGE LHLMSAPLKS
401: IDGLILFDRP KCSVRAEDIA SGASLSSSPG MENGDAGFDE KTLLERLSES FCSFCAQPLP SLHYESQKEA DIALCSDCFH DARFVTGHSS LDFQRVDGKK
501: DGLDNDGDSW TDQETFLLLE GIDKYKENWN AVAEHVGTKS KIQCLHHFLR LPVEDGLLEN IKVPEASFSS KVQNNGFLHS NSNGSTSGSL PQSGEAGDLP
601: FINTANPVMS LIAFLASSLG PRVAASCASE ALIVLTGGDS RISSIGNDVM GHAARPNCDS SLAVSSENVR HAARCGLSAA ATKCKLFADQ EEREIQRLSA
701: TIINHQLKRL ELKLKQFADI ETYLLRDSEQ SERMRQGLQA QRIRMMSGLR LASPRGNTMA SNPLSQANIR PPGIPGSMPQ AGTPAFYSNN MQQQQQQMQQ
801: QQQQLQQQQQ RQLQMLSFGG RLPLSAMNAP STSAAPNVMF DNPDMPGPSN QG
101: AKWRKRKRNA NTSAADHSDD SDSAVAAAAN DDNDDDDAAL HAATAAANGG GGTLGGGDDD PVVDLREAEV HPTAIERVSA FPPAFRRVVN RLHPSVLAVM
201: AAERAAAAAG AGAGGGGAAV PALENISHGQ LQVLSSVLPD HPSLSNDPDK PSSYVCTPPL LMECRGVAKQ FDGKLLMVPK HSDWFLPMTV HRLERQVLPQ
301: FFSGKSPGHT PEKYIMLRNR VITTYLERPA RRLAFSECQG LVTSTPELYD LSRIVRFLDA WGIINYLAAG SVQRGLRMAA TLIREEPTGE LHLMSAPLKS
401: IDGLILFDRP KCSVRAEDIA SGASLSSSPG MENGDAGFDE KTLLERLSES FCSFCAQPLP SLHYESQKEA DIALCSDCFH DARFVTGHSS LDFQRVDGKK
501: DGLDNDGDSW TDQETFLLLE GIDKYKENWN AVAEHVGTKS KIQCLHHFLR LPVEDGLLEN IKVPEASFSS KVQNNGFLHS NSNGSTSGSL PQSGEAGDLP
601: FINTANPVMS LIAFLASSLG PRVAASCASE ALIVLTGGDS RISSIGNDVM GHAARPNCDS SLAVSSENVR HAARCGLSAA ATKCKLFADQ EEREIQRLSA
701: TIINHQLKRL ELKLKQFADI ETYLLRDSEQ SERMRQGLQA QRIRMMSGLR LASPRGNTMA SNPLSQANIR PPGIPGSMPQ AGTPAFYSNN MQQQQQQMQQ
801: QQQQLQQQQQ RQLQMLSFGG RLPLSAMNAP STSAAPNVMF DNPDMPGPSN QG
001: MPASEDRRGK WKRKKRGGLS AARKPKQEEE DMEEEDEENN NNNNEEMDDV ENADELQQNG GATPDPGLGI GEVVEDSGSR ISDFPAVVKR VVIRPHASVM
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN
Arabidopsis Description
SWI3CSWI/SNF complex subunit SWI3C [Source:UniProtKB/Swiss-Prot;Acc:Q9XI07]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.