Subcellular Localization
min:
: max
Winner_takes_all: nucleus, plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G082880.12 | |
| HORVU6Hr1G034070.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G21700.1 | HORVU6Hr1G034070.2 | AT2G33610.1 | 12140326 |
| AT1G21700.1 | HORVU6Hr1G034070.2 | AT2G33610.1 | 16845477 |
| AT1G21700.1 | HORVU2Hr1G082880.12 | AT2G47620.1 | 16055636 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G128700.1 | Wheat | nucleus | 92.15 | 96.95 |
| TraesCS5B01G119800.1 | Wheat | nucleus | 92.27 | 96.34 |
| TraesCS5A01G113500.1 | Wheat | nucleus | 91.79 | 96.08 |
| EES15751 | Sorghum | nucleus | 66.55 | 71.19 |
| Zm00001d041847_P002 | Maize | nucleus | 66.06 | 70.76 |
| HORVU4Hr1G017950.27 | Barley | nucleus | 41.06 | 63.91 |
| Os12t0176700-00 | Rice | nucleus | 64.37 | 62.56 |
| GSMUA_Achr6P25400_001 | Banana | nucleus | 54.71 | 57.78 |
| GSMUA_Achr8P30120_001 | Banana | nucleus | 52.9 | 56.08 |
| VIT_18s0001g02160.t01 | Wine grape | nucleus | 25.0 | 46.73 |
| Bra017943.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 34.42 | 46.19 |
| KRH64632 | Soybean | nucleus | 43.6 | 45.99 |
| KRH53271 | Soybean | nucleus | 43.6 | 45.99 |
| KRH17984 | Soybean | nucleus | 40.7 | 44.05 |
| KRH16394 | Soybean | nucleus | 40.94 | 43.69 |
| CDY08183 | Canola | cytosol, nucleus, vacuole | 39.25 | 43.57 |
| Solyc06g060120.2.1 | Tomato | nucleus | 41.3 | 43.24 |
| CDY58587 | Canola | cytosol, endoplasmic reticulum, nucleus | 39.37 | 42.78 |
| CDY04665 | Canola | cytosol, nucleus, vacuole | 38.41 | 42.68 |
| Bra016409.1-P | Field mustard | nucleus | 40.58 | 42.37 |
| CDX96578 | Canola | nucleus | 40.58 | 42.32 |
| AT1G21700.1 | Thale cress | nucleus | 40.34 | 41.39 |
| VIT_18s0001g02190.t01 | Wine grape | nucleus | 17.63 | 40.56 |
| HORVU2Hr1G082870.3 | Barley | mitochondrion | 5.68 | 22.71 |
| HORVU6Hr1G034070.2 | Barley | plastid | 12.68 | 21.13 |
| HORVU2Hr1G082880.12 | Barley | nucleus | 8.45 | 18.42 |
| HORVU4Hr1G008820.1 | Barley | nucleus | 19.08 | 16.58 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:1.10.10.60 | MapMan:12.4.2.1 | UniProt:A0A287QVM4 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:HORVU5Hr1G037060 | EnsemblPlants:HORVU5Hr1G037060.1 | InterPro:Homeobox-like_sf | InterPro:IPR007526 |
| InterPro:IPR017884 | InterPro:IPR036388 | PFAM:PF00249 | PFAM:PF04433 | PFAM:PF16495 | PFscan:PS50934 |
| PFscan:PS51293 | PANTHER:PTHR12802 | PANTHER:PTHR12802:SF61 | InterPro:SANT/Myb | InterPro:SANT_dom | SMART:SM00717 |
| InterPro:SMARCC_C | SUPFAM:SSF46689 | InterPro:SWIRM | UniParc:UPI000B480FC1 | InterPro:WH-like_DNA-bd_sf | SEG:seg |
Description
No Description!
Coordinates
chrchr5H:+:266210861..266225189
Molecular Weight (calculated)
89134.8 Da
IEP (calculated)
6.788
GRAVY (calculated)
-0.431
Length
828 amino acids
Sequence
(BLAST)
(BLAST)
001: EKIRTGELKS PPHSSRTCLP APPWPPSLAG TQSKLPPPFP PPPAPATMPR KASSSSDAKL KWRKRKRSQD TSPSKQSGGA DHSDDSDSAA ANDEDDALHG
101: SANGGETLGA RGGDDDTVPD LREAEVLSSA EPVSGFPSAT RRTISRLHPS VLAIIAADRA LAAGASCASA PPAPALENIS HGQLQVLAAM LPDHPSLSND
201: PDKPSSYVCT VPPLMECQGV PKQFYSKLLV VPRHSDWFSP ATVHRLERQV VPHFFSGKSP GHTPEKYMML RNKVIVKYLE RPSRRLAFAE CQGLVTSTAE
301: LYDLSRIVRF LDTWGIINYL AAGSVHRGLR LASSLIREEQ TGELQLASAP LKSIDGLILF DRPKCSARAE DIASVASTSS ALEVPNGDTG FADLDEKIWE
401: RLSENFCSYC SQPLPSLHYE SQKEADIALC SDCFHDARFV PGHSSLDFQR VDGMKDGSDN DGDSWTHEET LQLLDGLEKY NDNWNAIAEH VGTKSKAQCI
501: HHFIRIPVED GLLESIEVPE ASVSSRVQSN GFSYSNSNGG ISGSFPQSSQ PGQQLPFVNS ANPVMSLVAF LASAVGPRIA ASCANAALSV LTREDSRMCS
601: DGNDVTGHAA RPNYDASSPV SPENVKYAAM CGLSAAATKC KLFADQEERE IQRLAATIIN HQLKRLELKL KQFAEVETLL LKESEQVERA RQNLTAQRVR
701: FMSARFASTG GPMPGGSSST MVSNPMNQAS PRPPAMPGSM PPASMQAFYG NNMQGHPAQM AFLQQQQRQQ QQMLSFGPRL PLSAIHPGSS SSAAPSVMFN
801: PGMPSSATPN HHSMLRPPSS GSNNSSFG
101: SANGGETLGA RGGDDDTVPD LREAEVLSSA EPVSGFPSAT RRTISRLHPS VLAIIAADRA LAAGASCASA PPAPALENIS HGQLQVLAAM LPDHPSLSND
201: PDKPSSYVCT VPPLMECQGV PKQFYSKLLV VPRHSDWFSP ATVHRLERQV VPHFFSGKSP GHTPEKYMML RNKVIVKYLE RPSRRLAFAE CQGLVTSTAE
301: LYDLSRIVRF LDTWGIINYL AAGSVHRGLR LASSLIREEQ TGELQLASAP LKSIDGLILF DRPKCSARAE DIASVASTSS ALEVPNGDTG FADLDEKIWE
401: RLSENFCSYC SQPLPSLHYE SQKEADIALC SDCFHDARFV PGHSSLDFQR VDGMKDGSDN DGDSWTHEET LQLLDGLEKY NDNWNAIAEH VGTKSKAQCI
501: HHFIRIPVED GLLESIEVPE ASVSSRVQSN GFSYSNSNGG ISGSFPQSSQ PGQQLPFVNS ANPVMSLVAF LASAVGPRIA ASCANAALSV LTREDSRMCS
601: DGNDVTGHAA RPNYDASSPV SPENVKYAAM CGLSAAATKC KLFADQEERE IQRLAATIIN HQLKRLELKL KQFAEVETLL LKESEQVERA RQNLTAQRVR
701: FMSARFASTG GPMPGGSSST MVSNPMNQAS PRPPAMPGSM PPASMQAFYG NNMQGHPAQM AFLQQQQRQQ QQMLSFGPRL PLSAIHPGSS SSAAPSVMFN
801: PGMPSSATPN HHSMLRPPSS GSNNSSFG
001: MPASEDRRGK WKRKKRGGLS AARKPKQEEE DMEEEDEENN NNNNEEMDDV ENADELQQNG GATPDPGLGI GEVVEDSGSR ISDFPAVVKR VVIRPHASVM
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN
Arabidopsis Description
SWI3CSWI/SNF complex subunit SWI3C [Source:UniProtKB/Swiss-Prot;Acc:Q9XI07]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.