CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH51554
KRH53340
KRH60872
KRH64580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G21700.1	KRH51554	AT2G33610.1	12140326
AT1G21700.1	KRH60872	AT2G33610.1	12140326
AT1G21700.1	KRH51554	AT2G33610.1	16845477
AT1G21700.1	KRH60872	AT2G33610.1	16845477
AT1G21700.1	KRH53340	AT2G47620.1	16055636
AT1G21700.1	KRH64580	AT2G47620.1	16055636

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53271	Soybean	nucleus	94.27	94.27
KRH17984	Soybean	nucleus	70.32	72.16
KRH16394	Soybean	nucleus	69.17	69.97
VIT_18s0001g02160.t01	Wine grape	nucleus	36.05	63.88
Bra017943.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	44.08	56.08
Solyc06g060120.2.1	Tomato	nucleus	55.41	54.99
CDY04665	Canola	cytosol, nucleus, vacuole	50.7	53.42
CDY08183	Canola	cytosol, nucleus, vacuole	50.57	53.22
CDY58587	Canola	cytosol, endoplasmic reticulum, nucleus	50.83	52.36
Bra016409.1-P	Field mustard	nucleus	52.61	52.08
CDX96578	Canola	nucleus	52.61	52.02
AT1G21700.1	Thale cress	nucleus	53.38	51.92
VIT_18s0001g02190.t01	Wine grape	nucleus	22.29	48.61
Os11t0183700-01	Rice	mitochondrion	47.64	47.7
GSMUA_Achr8P30120_001	Banana	nucleus	47.26	47.5
GSMUA_Achr6P25400_001	Banana	nucleus	47.39	47.45
OQU83031	Sorghum	cytosol, mitochondrion, nucleus, plastid	46.75	47.29
TraesCS4B01G097500.1	Wheat	cytosol, mitochondrion, nucleus	29.04	46.72
HORVU4Hr1G017950.27	Barley	nucleus	31.46	46.43
TraesCS4A01G218700.1	Wheat	cytosol, nucleus, plastid	25.73	46.33
TraesCS5D01G128700.1	Wheat	nucleus	46.24	46.12
EES15751	Sorghum	nucleus	45.48	46.12
Zm00001d000110_P003	Maize	mitochondrion	45.86	45.92
TraesCS5B01G119800.1	Wheat	nucleus	46.24	45.78
Zm00001d041847_P002	Maize	nucleus	44.97	45.67
TraesCS5A01G113500.1	Wheat	nucleus	45.86	45.51
TraesCS4D01G093900.2	Wheat	cytosol, nucleus, plastid	44.46	45.09
HORVU5Hr1G037060.1	Barley	nucleus, plastid	45.99	43.6
TraesCS4B01G097600.1	Wheat	nucleus	11.72	40.35
Os12t0176700-00	Rice	nucleus	42.29	38.97
KRH53340	Soybean	nucleus	15.16	22.75
KRH60872	Soybean	nucleus	13.89	22.52
KRH64580	Soybean	nucleus	15.03	22.39
KRH51554	Soybean	nucleus	13.63	21.79
KRH24488	Soybean	nucleus	23.06	17.82
KRH29482	Soybean	nucleus	23.18	17.38

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	EntrezGene:100780440	MapMan:12.4.2.1	EMBL:ACUP02002770	ncoils:Coil
EnsemblPlantsGene:GLYMA_04G247200	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:IPR007526
InterPro:IPR017884	InterPro:IPR036388	UniProt:K7KM59	EnsemblPlants:KRH64632	ProteinID:KRH64632	ProteinID:KRH64632.1
PFAM:PF00249	PFAM:PF04433	PFAM:PF16495	PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802
PANTHER:PTHR12802:SF61	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00717	InterPro:SMARCC_C	SUPFAM:SSF46689
InterPro:SWIRM	UniParc:UPI000295DD3D	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:51433232..51440743

Molecular Weight (calculated)

86448.2 Da

IEP (calculated)

6.323

GRAVY (calculated)

-0.558

Length

785 amino acids

Sequence
(BLAST)

001: MPASPSENRT RWRKRKRDSQ ISRRHQKHEE DDDDDDENPN AEEDLAERDY DSEDQTHHNH PNSQPHVETE VLSDHGVQIS QFPAVIKRSV NRPHSSVTAI
101: VALERALESG ENKAPSALAA PVLENVSHGQ LQALSSVPSD SFAFDGDSSF VITPPPILEG RGVVKRYGTK ALVVPMHSDW FSPATVHRLE RQVVPHFFSG
201: KSPDHTPEKY MECRNCIVAL HMEDPGKRIT VSDCKGLLAG VNVEDLTRIV RFLDHWGIIN YCVRMPSHES PNAVSCLREE TSGEVRVPSE ALKSIDSLIK
301: FDKPNCKLKA DEIYSSLSAH SADVLDLEDR IREHLSENHC NYCSCPLPVV YYQSQKEVDI LLCTDCFHDG RFVIGHSSID FVRVDSTRDY GELDGDSWTD
401: QETLLLLEAM EIYNENWNEI AEHVGTKSKA QCILHFLRLP MEDGKLENIN VPSMSLSSNA INRDHSGRLH CYSNGDTAGT VHQTRDSDNR LPFANSGNPV
501: MALVAFLASA VGPRVAASCA HAALAVLSED NSGSTSQMEA PGHDNRTNSE NIHCRDGGPH GETAVSNNHN EDKAKVRGSW GLNEGRITPL SAEKVKDAAK
601: AGLSAAAMKA KLFADHEERE IQRLCANIVN HQLKRLELKL KQFAEIETLL MKECEQLERT KQRCAADRSR IMSARLGTVG ATPTMNASGV GPSMASNGNN
701: RQQMISASSS QPSVSGYGNN QPVHPHMSFA PRPSMFGLGQ RLPLSMIQQS QPASSTAMFN APSNVQPTTN HPLLRSVSGT NSGLG

Best Arabidopsis Sequence Match ( AT1G21700.1 )
(BLAST)

001: MPASEDRRGK WKRKKRGGLS AARKPKQEEE DMEEEDEENN NNNNEEMDDV ENADELQQNG GATPDPGLGI GEVVEDSGSR ISDFPAVVKR VVIRPHASVM
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN

Arabidopsis Description

SWI3CSWI/SNF complex subunit SWI3C [Source:UniProtKB/Swiss-Prot;Acc:Q9XI07]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.