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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol, nucleus, vacuole

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • mitochondrion 1
  • vacuole 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY08183 Canola cytosol, nucleus, vacuole 96.11 95.98
CDY58587 Canola cytosol, endoplasmic reticulum, nucleus 85.23 83.33
CDX96578 Canola nucleus 85.23 79.97
AT1G21700.1 Thale cress nucleus 84.83 78.31
VIT_18s0001g02160.t01 Wine grape nucleus 31.81 53.5
KRH53271 Soybean nucleus 53.69 50.96
KRH64632 Soybean nucleus 53.42 50.7
KRH17984 Soybean nucleus 48.99 47.71
Solyc06g060120.2.1 Tomato nucleus 49.93 47.03
KRH16394 Soybean nucleus 48.59 46.65
VIT_18s0001g02190.t01 Wine grape nucleus 21.21 43.89
GSMUA_Achr8P30120_001 Banana nucleus 45.37 43.28
GSMUA_Achr6P25400_001 Banana nucleus 45.1 42.86
Os11t0183700-01 Rice mitochondrion 43.89 41.71
OQU83031 Sorghum cytosol, mitochondrion, nucleus, plastid 43.22 41.49
Zm00001d000110_P003 Maize mitochondrion 43.36 41.2
Zm00001d041847_P002 Maize nucleus 42.15 40.62
EES15751 Sorghum nucleus 42.15 40.57
TraesCS5D01G128700.1 Wheat nucleus 42.82 40.53
TraesCS5B01G119800.1 Wheat nucleus 42.82 40.23
TraesCS5A01G113500.1 Wheat nucleus 42.68 40.2
TraesCS4D01G093900.2 Wheat cytosol, nucleus, plastid 41.07 39.53
HORVU4Hr1G017950.27 Barley nucleus 28.19 39.47
TraesCS4B01G097500.1 Wheat cytosol, mitochondrion, nucleus 25.77 39.34
TraesCS4A01G218700.1 Wheat cytosol, nucleus, plastid 22.55 38.53
HORVU5Hr1G037060.1 Barley nucleus, plastid 42.68 38.41
TraesCS4B01G097600.1 Wheat nucleus 11.54 37.72
Os12t0176700-00 Rice nucleus 40.0 34.98
CDX83324 Canola nucleus 15.84 23.98
CDY23721 Canola plastid 14.23 23.09
CDX95728 Canola nucleus 15.44 23.09
CDY37705 Canola plastid 13.83 22.44
CDX80122 Canola nucleus 14.36 20.9
CDY66036 Canola nucleus 14.5 20.81
CDX75433 Canola nucleus 21.61 17.22
CDY46250 Canola nucleus 21.48 16.9
CDX76281 Canola nucleus 21.34 16.49
Protein Annotations
Gene3D:1.10.10.10Gene3D:1.10.10.60MapMan:12.4.2.1GO:A0A078ERZ3EnsemblPlants:CDY04665ProteinID:CDY04665
ProteinID:CDY04665.1ncoils:CoilGO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488
GO:GO:0005515EnsemblPlantsGene:GSBRNA2T00119265001InterPro:Homeobox-like_sfInterPro:IPR007526InterPro:IPR017884InterPro:IPR036388
PFAM:PF00249PFAM:PF04433PFAM:PF16495PFscan:PS50934PFscan:PS51293PANTHER:PTHR12802
PANTHER:PTHR12802:SF61InterPro:SANT/MybInterPro:SANT_domSMART:SM00717InterPro:SMARCC_CSUPFAM:SSF46689
InterPro:SWIRMUniParc:UPI0004EE7BC0InterPro:WH-like_DNA-bd_sfSEG:seg::
Description
BnaC05g17030D
Coordinates
chrLK031956:-:696830..700209
Molecular Weight (calculated)
81000.2 Da
IEP (calculated)
4.808
GRAVY (calculated)
-0.488
Length
745 amino acids
Sequence
(BLAST)
001: MEEEDEDNNN NEEMEDADNA DELHQNGGAT PDPGPGVNEV VEDSGTRISD FPSVVRRVVI RPHASVTAVV AAERAGLIGE SRGQGSLPSL ENISYGQLQA
101: LSTVPADSVS LDTERSDGAS SAYVISPPLI MEGEGVVKRF GDKVHVLPMH SAWFAPNTVD RLERQVVPQF FSGKSPNHSP ESYMHFRNAI VSKYTDNPEK
201: ALTISDCQGL VDGVDNEDFA RVFRFLDHWG IINYCATSQC HPEPSRDISD VREDSNGEVH VPSAALTSIE SLIKFNKPSC GHKSDSSVSC SDVDLPDLDI
301: RIREHLCDNH CNHCSRPLPT VYFQSQKKED VLLCSDCFHH ARFVAGHSCI DFVRVDTTKQ YGDQDGENWS DQETLLLLEA VELYNENWVQ IADHVGSKSK
401: AQCILHFLRL PVEDGLLDNV ELPGVAYPAN PTNGYDHKGT DSNGALPGSS EQESETEINL PFVKSPNPVM ALVAFLASAV GPRVASSCAH ESLMVLSADD
501: RSKSEGKDPS LVDETTCQNG AEAPTPLPQD KVMAAFRAGL SAAATKAKLF ADHEEREIQR LSANIVNHQL KRMELKLKQF AEIETLLMKE CEQVEKTRQR
601: FAAERARMVS ARFGSPGQTS NTNNLQGMSL STGGGNNINT LLQQQQGSAS SSQPSIIPGF SNNPQLHAQM QFMARQQQQQ QAFSFGPRLP LNAIQTNAGS
701: TPSLFGNNQL NNNPAGPASI NQPPFSHPMV RSSTGSGSGS GLGLN
Best Arabidopsis Sequence Match ( AT1G21700.1 )
(BLAST)
001: MPASEDRRGK WKRKKRGGLS AARKPKQEEE DMEEEDEENN NNNNEEMDDV ENADELQQNG GATPDPGLGI GEVVEDSGSR ISDFPAVVKR VVIRPHASVM
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN
Arabidopsis Description
SWI3CSWI/SNF complex subunit SWI3C [Source:UniProtKB/Swiss-Prot;Acc:Q9XI07]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.