Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- vacuole 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY08183 | Canola | cytosol, nucleus, vacuole | 96.11 | 95.98 |
CDY58587 | Canola | cytosol, endoplasmic reticulum, nucleus | 85.23 | 83.33 |
CDX96578 | Canola | nucleus | 85.23 | 79.97 |
AT1G21700.1 | Thale cress | nucleus | 84.83 | 78.31 |
VIT_18s0001g02160.t01 | Wine grape | nucleus | 31.81 | 53.5 |
KRH53271 | Soybean | nucleus | 53.69 | 50.96 |
KRH64632 | Soybean | nucleus | 53.42 | 50.7 |
KRH17984 | Soybean | nucleus | 48.99 | 47.71 |
Solyc06g060120.2.1 | Tomato | nucleus | 49.93 | 47.03 |
KRH16394 | Soybean | nucleus | 48.59 | 46.65 |
VIT_18s0001g02190.t01 | Wine grape | nucleus | 21.21 | 43.89 |
GSMUA_Achr8P30120_001 | Banana | nucleus | 45.37 | 43.28 |
GSMUA_Achr6P25400_001 | Banana | nucleus | 45.1 | 42.86 |
Os11t0183700-01 | Rice | mitochondrion | 43.89 | 41.71 |
OQU83031 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 43.22 | 41.49 |
Zm00001d000110_P003 | Maize | mitochondrion | 43.36 | 41.2 |
Zm00001d041847_P002 | Maize | nucleus | 42.15 | 40.62 |
EES15751 | Sorghum | nucleus | 42.15 | 40.57 |
TraesCS5D01G128700.1 | Wheat | nucleus | 42.82 | 40.53 |
TraesCS5B01G119800.1 | Wheat | nucleus | 42.82 | 40.23 |
TraesCS5A01G113500.1 | Wheat | nucleus | 42.68 | 40.2 |
TraesCS4D01G093900.2 | Wheat | cytosol, nucleus, plastid | 41.07 | 39.53 |
HORVU4Hr1G017950.27 | Barley | nucleus | 28.19 | 39.47 |
TraesCS4B01G097500.1 | Wheat | cytosol, mitochondrion, nucleus | 25.77 | 39.34 |
TraesCS4A01G218700.1 | Wheat | cytosol, nucleus, plastid | 22.55 | 38.53 |
HORVU5Hr1G037060.1 | Barley | nucleus, plastid | 42.68 | 38.41 |
TraesCS4B01G097600.1 | Wheat | nucleus | 11.54 | 37.72 |
Os12t0176700-00 | Rice | nucleus | 40.0 | 34.98 |
CDX83324 | Canola | nucleus | 15.84 | 23.98 |
CDY23721 | Canola | plastid | 14.23 | 23.09 |
CDX95728 | Canola | nucleus | 15.44 | 23.09 |
CDY37705 | Canola | plastid | 13.83 | 22.44 |
CDX80122 | Canola | nucleus | 14.36 | 20.9 |
CDY66036 | Canola | nucleus | 14.5 | 20.81 |
CDX75433 | Canola | nucleus | 21.61 | 17.22 |
CDY46250 | Canola | nucleus | 21.48 | 16.9 |
CDX76281 | Canola | nucleus | 21.34 | 16.49 |
Protein Annotations
Gene3D:1.10.10.10 | Gene3D:1.10.10.60 | MapMan:12.4.2.1 | GO:A0A078ERZ3 | EnsemblPlants:CDY04665 | ProteinID:CDY04665 |
ProteinID:CDY04665.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00119265001 | InterPro:Homeobox-like_sf | InterPro:IPR007526 | InterPro:IPR017884 | InterPro:IPR036388 |
PFAM:PF00249 | PFAM:PF04433 | PFAM:PF16495 | PFscan:PS50934 | PFscan:PS51293 | PANTHER:PTHR12802 |
PANTHER:PTHR12802:SF61 | InterPro:SANT/Myb | InterPro:SANT_dom | SMART:SM00717 | InterPro:SMARCC_C | SUPFAM:SSF46689 |
InterPro:SWIRM | UniParc:UPI0004EE7BC0 | InterPro:WH-like_DNA-bd_sf | SEG:seg | : | : |
Description
BnaC05g17030D
Coordinates
chrLK031956:-:696830..700209
Molecular Weight (calculated)
81000.2 Da
IEP (calculated)
4.808
GRAVY (calculated)
-0.488
Length
745 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEDEDNNN NEEMEDADNA DELHQNGGAT PDPGPGVNEV VEDSGTRISD FPSVVRRVVI RPHASVTAVV AAERAGLIGE SRGQGSLPSL ENISYGQLQA
101: LSTVPADSVS LDTERSDGAS SAYVISPPLI MEGEGVVKRF GDKVHVLPMH SAWFAPNTVD RLERQVVPQF FSGKSPNHSP ESYMHFRNAI VSKYTDNPEK
201: ALTISDCQGL VDGVDNEDFA RVFRFLDHWG IINYCATSQC HPEPSRDISD VREDSNGEVH VPSAALTSIE SLIKFNKPSC GHKSDSSVSC SDVDLPDLDI
301: RIREHLCDNH CNHCSRPLPT VYFQSQKKED VLLCSDCFHH ARFVAGHSCI DFVRVDTTKQ YGDQDGENWS DQETLLLLEA VELYNENWVQ IADHVGSKSK
401: AQCILHFLRL PVEDGLLDNV ELPGVAYPAN PTNGYDHKGT DSNGALPGSS EQESETEINL PFVKSPNPVM ALVAFLASAV GPRVASSCAH ESLMVLSADD
501: RSKSEGKDPS LVDETTCQNG AEAPTPLPQD KVMAAFRAGL SAAATKAKLF ADHEEREIQR LSANIVNHQL KRMELKLKQF AEIETLLMKE CEQVEKTRQR
601: FAAERARMVS ARFGSPGQTS NTNNLQGMSL STGGGNNINT LLQQQQGSAS SSQPSIIPGF SNNPQLHAQM QFMARQQQQQ QAFSFGPRLP LNAIQTNAGS
701: TPSLFGNNQL NNNPAGPASI NQPPFSHPMV RSSTGSGSGS GLGLN
101: LSTVPADSVS LDTERSDGAS SAYVISPPLI MEGEGVVKRF GDKVHVLPMH SAWFAPNTVD RLERQVVPQF FSGKSPNHSP ESYMHFRNAI VSKYTDNPEK
201: ALTISDCQGL VDGVDNEDFA RVFRFLDHWG IINYCATSQC HPEPSRDISD VREDSNGEVH VPSAALTSIE SLIKFNKPSC GHKSDSSVSC SDVDLPDLDI
301: RIREHLCDNH CNHCSRPLPT VYFQSQKKED VLLCSDCFHH ARFVAGHSCI DFVRVDTTKQ YGDQDGENWS DQETLLLLEA VELYNENWVQ IADHVGSKSK
401: AQCILHFLRL PVEDGLLDNV ELPGVAYPAN PTNGYDHKGT DSNGALPGSS EQESETEINL PFVKSPNPVM ALVAFLASAV GPRVASSCAH ESLMVLSADD
501: RSKSEGKDPS LVDETTCQNG AEAPTPLPQD KVMAAFRAGL SAAATKAKLF ADHEEREIQR LSANIVNHQL KRMELKLKQF AEIETLLMKE CEQVEKTRQR
601: FAAERARMVS ARFGSPGQTS NTNNLQGMSL STGGGNNINT LLQQQQGSAS SSQPSIIPGF SNNPQLHAQM QFMARQQQQQ QAFSFGPRLP LNAIQTNAGS
701: TPSLFGNNQL NNNPAGPASI NQPPFSHPMV RSSTGSGSGS GLGLN
001: MPASEDRRGK WKRKKRGGLS AARKPKQEEE DMEEEDEENN NNNNEEMDDV ENADELQQNG GATPDPGLGI GEVVEDSGSR ISDFPAVVKR VVIRPHASVM
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN
Arabidopsis Description
SWI3CSWI/SNF complex subunit SWI3C [Source:UniProtKB/Swiss-Prot;Acc:Q9XI07]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.