Factsheet for TraesCS4B01G097500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, mitochondrion

Predictor Summary:

mitochondrion 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2B01G356600.1
TraesCS2D01G337400.1
TraesCS6A01G167800.1
TraesCS6B01G195400.1
TraesCS6D01G156700.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G21700.1	TraesCS6A01G167800.1	AT2G33610.1	12140326
AT1G21700.1	TraesCS6B01G195400.1	AT2G33610.1	12140326
AT1G21700.1	TraesCS6D01G156700.3	AT2G33610.1	12140326
AT1G21700.1	TraesCS6A01G167800.1	AT2G33610.1	16845477
AT1G21700.1	TraesCS6B01G195400.1	AT2G33610.1	16845477
AT1G21700.1	TraesCS6D01G156700.3	AT2G33610.1	16845477
AT1G21700.1	TraesCS2B01G356600.1	AT2G47620.1	16055636
AT1G21700.1	TraesCS2D01G337400.1	AT2G47620.1	16055636

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G218700.1	Wheat	cytosol, nucleus, plastid	82.79	92.66
HORVU4Hr1G017950.27	Barley	nucleus	88.32	81.02
TraesCS4D01G093900.2	Wheat	cytosol, nucleus, plastid	94.67	59.69
Os11t0183700-01	Rice	mitochondrion	77.05	47.96
OQU83031	Sorghum	cytosol, mitochondrion, nucleus, plastid	73.77	46.39
Zm00001d000110_P003	Maize	mitochondrion	72.95	45.41
TraesCS5B01G119800.1	Wheat	nucleus	67.83	41.74
GSMUA_Achr6P25400_001	Banana	nucleus	57.58	35.84
VIT_18s0001g02190.t01	Wine grape	nucleus	26.02	35.28
GSMUA_Achr8P30120_001	Banana	nucleus	55.94	34.96
KRH53271	Soybean	nucleus	47.13	29.3
KRH64632	Soybean	nucleus	46.72	29.04
KRH17984	Soybean	nucleus	43.85	27.97
KRH16394	Soybean	nucleus	44.47	27.96
Solyc06g060120.2.1	Tomato	nucleus	43.85	27.05
CDY08183	Canola	cytosol, nucleus, vacuole	40.57	26.54
Bra016409.1-P	Field mustard	nucleus	42.42	26.1
CDX96578	Canola	nucleus	42.42	26.07
AT1G21700.1	Thale cress	nucleus	42.83	25.9
CDY58587	Canola	cytosol, endoplasmic reticulum, nucleus	40.37	25.85
CDY04665	Canola	cytosol, nucleus, vacuole	39.34	25.77
Bra017943.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	31.15	24.64
TraesCS6B01G195400.1	Wheat	plastid	14.75	14.6
VIT_18s0001g02160.t01	Wine grape	nucleus	12.7	14.0
TraesCS2B01G356600.1	Wheat	nucleus	14.75	12.93
TraesCS4B01G053000.2	Wheat	nucleus	20.9	10.74
TraesCS4B01G097600.1	Wheat	nucleus	0.82	1.75

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR017884	InterPro:IPR036388
PFAM:PF00249	PFAM:PF04433	PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF61
InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00717	SUPFAM:SSF46689	InterPro:SWIRM	EnsemblPlantsGene:TraesCS4B01G097500
EnsemblPlants:TraesCS4B01G097500.1	InterPro:WH-like_DNA-bd_sf	TIGR:cd00167	SEG:seg	:	:

Description

No Description!

Coordinates

chr4B:+:102386025..102388363

Molecular Weight (calculated)

53555.7 Da

IEP (calculated)

5.061

GRAVY (calculated)

-0.365

Length

488 amino acids

Sequence
(BLAST)

001: MPRKASCTPD SRTKWRKRKR NSDALPLPSA AADHSDNPDS AADNDDDDTA VPSPAVDNAD DEILAGAAAR DPVPDLREAE LLSSAEVISA FPAATRRTVN
101: RPHPSVMAVV AAERAAYVGD VSAAVPPALE NISHGQLQVL SVALPDHQSL LTDPDRPSSY VCTPPPLMEG HGVHKQFQGR LHVVPKHSDW FSPGAVHRLE
201: RQVVPHFFTG KSPVHTPEKF IMLRNKIIAK YLENPGKRLA FAECQGFVNT GELYDLSRIV RFLDTWGIIN HLVVGLVHRG LRVAASLLIE EPAGELQLLT
301: APLKSIDGLV LFDRPKCSLQ ADDISSLASS SSNSEVVDFD VGAEFTELEG KIRDCLSESY CSYCSQSLHS LHYQSQKEIE QADIALCSDC FHDARYAIGH
401: SSLDFQRVDG DKDGSENEGD NWTDPETLLL LEGIEKHKDN WNSIADHVGT KSKAQCIYHF IRLPVEDSLL ENIEVPDASM PFRPQSNG

Best Arabidopsis Sequence Match ( AT1G21700.1 )
(BLAST)

001: MPASEDRRGK WKRKKRGGLS AARKPKQEEE DMEEEDEENN NNNNEEMDDV ENADELQQNG GATPDPGLGI GEVVEDSGSR ISDFPAVVKR VVIRPHASVM
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN

Arabidopsis Description

SWI3CSWI/SNF complex subunit SWI3C [Source:UniProtKB/Swiss-Prot;Acc:Q9XI07]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.